RNA id: TU1947472


Basic Information

Item Value
RNA id TU1947472
length 300
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1701642
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3892047 ~ 3892604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAGAAAGACATGGGGGTACAGTAGTGACAGGCAGCAATGAGATGAacaggtagtacctctcctttatATATTTACCCAATGAGATGAacaggtagtacctctcctttatatatttaccaggtagtacctctccttcaTATATTTACCCAATGAGATGAacaggtagtacctctccttcaTATATTTACCCAATGAGATGAacaggtagtacctctccttcaTATATTTACCCAATGAGATGAacaggtagtacctctccttcatatatttaccaggtagtacctcttcttcatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947468 lncRNA upstream 4500 3885919 ~ 3887547 (+) True G1701638
TU1947449 lncRNA upstream 33984 3856767 ~ 3858063 (+) True G1701621
TU1947429 lncRNA upstream 101114 3789957 ~ 3790933 (+) True G1701602
TU1947412 lncRNA upstream 119802 3771490 ~ 3772245 (+) True G1701595
TU1947403 lncRNA upstream 128855 3762819 ~ 3763192 (+) True G1701591
TU1947483 lncRNA downstream 22870 3915474 ~ 3916514 (+) True G1701651
TU1947485 lncRNA downstream 32050 3924654 ~ 3925049 (+) True G1701653
TU1947495 lncRNA downstream 42857 3935461 ~ 3936037 (+) True G1701654
TU1947507 lncRNA downstream 52120 3944724 ~ 3945962 (+) False G1701660
TU1947504 lncRNA downstream 52667 3945271 ~ 3948377 (+) False G1701660
XM_036956616.1 mRNA upstream 308549 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 329455 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 500453 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 654475 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 655691 2819887 ~ 3236356 (+) False LOC110499725
XM_036956628.1 mRNA downstream 491412 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 491412 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 491412 4384016 ~ 4441236 (+) False LOC110516816
XM_036956636.1 mRNA downstream 558512 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 558515 4451119 ~ 4459751 (+) False si:dkey-39a18.1
TU1947414 other upstream 115786 3774039 ~ 3776261 (+) True G1701596
TU1947013 other upstream 1042444 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 1238428 2639340 ~ 2653619 (+) False LOC110519348
TU1945285 other upstream 2022493 1867694 ~ 1869554 (+) False G1699934
TU1947490 other downstream 40183 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 40183 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 41326 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 491452 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other downstream 502389 4394993 ~ 4395515 (+) True G1702554

Expression Profile