RNA id: TU1947483


Basic Information

Item Value
RNA id TU1947483
length 292
lncRNA type intronic
GC content 0.41
exon number 3
gene id G1701651
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3915474 ~ 3916514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaagaggagactatagggactctaaagaggagactatagggactctaaagaggagactatagggactctaaagaggagactataggaactaaagaggagactatagggactctaaagaggagactataggaactaaagaggagactataggaactCCAAAGAGGAGACGATAgggactctaaagaggagactataggaactctaaagaggagactatcaggactaaagaggagactataggaactctaaagaggagactatcaGGACTAAAGAGGAAACTATAggaactct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947472 lncRNA upstream 22870 3892047 ~ 3892604 (+) True G1701642
TU1947468 lncRNA upstream 27927 3885919 ~ 3887547 (+) True G1701638
TU1947449 lncRNA upstream 57411 3856767 ~ 3858063 (+) True G1701621
TU1947429 lncRNA upstream 124541 3789957 ~ 3790933 (+) True G1701602
TU1947412 lncRNA upstream 143229 3771490 ~ 3772245 (+) True G1701595
TU1947485 lncRNA downstream 8140 3924654 ~ 3925049 (+) True G1701653
TU1947495 lncRNA downstream 18947 3935461 ~ 3936037 (+) True G1701654
TU1947507 lncRNA downstream 28210 3944724 ~ 3945962 (+) False G1701660
TU1947504 lncRNA downstream 28757 3945271 ~ 3948377 (+) False G1701660
TU1947506 lncRNA downstream 28757 3945271 ~ 3945962 (+) True G1701660
XM_036956616.1 mRNA upstream 331976 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 352882 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 523880 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 677902 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 679118 2819887 ~ 3236356 (+) False LOC110499725
XM_036956628.1 mRNA downstream 467502 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 467502 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 467502 4384016 ~ 4441236 (+) False LOC110516816
XM_036956636.1 mRNA downstream 534602 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 534605 4451119 ~ 4459751 (+) False si:dkey-39a18.1
TU1947414 other upstream 139213 3774039 ~ 3776261 (+) True G1701596
TU1947013 other upstream 1065871 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 1261855 2639340 ~ 2653619 (+) False LOC110519348
TU1945285 other upstream 2045920 1867694 ~ 1869554 (+) False G1699934
TU1947490 other downstream 16273 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 16273 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 17416 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 467542 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other downstream 478479 4394993 ~ 4395515 (+) True G1702554

Expression Profile