RNA id: TU1947485


Basic Information

Item Value
RNA id TU1947485
length 224
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1701653
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3924654 ~ 3925049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATATGCAGCaactctgttcagatggacatgaggagaactcagatggacatgaggagaactctgttcagatagacatgaagagaactcagatagacatgaggagaactcagatagacatgaggagacctctgttcagatagacatgaggagacctcagatagacatgaggagaactctgttcagatggacatgaggagaactctgatagacatgaggagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947483 lncRNA upstream 8140 3915474 ~ 3916514 (+) True G1701651
TU1947472 lncRNA upstream 32050 3892047 ~ 3892604 (+) True G1701642
TU1947468 lncRNA upstream 37107 3885919 ~ 3887547 (+) True G1701638
TU1947449 lncRNA upstream 66591 3856767 ~ 3858063 (+) True G1701621
TU1947429 lncRNA upstream 133721 3789957 ~ 3790933 (+) True G1701602
TU1947495 lncRNA downstream 10412 3935461 ~ 3936037 (+) True G1701654
TU1947507 lncRNA downstream 19675 3944724 ~ 3945962 (+) False G1701660
TU1947504 lncRNA downstream 20222 3945271 ~ 3948377 (+) False G1701660
TU1947506 lncRNA downstream 20222 3945271 ~ 3945962 (+) True G1701660
TU1947510 lncRNA downstream 30342 3955391 ~ 3955999 (+) True G1701663
XM_036956616.1 mRNA upstream 341156 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 362062 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 533060 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 687082 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 688298 2819887 ~ 3236356 (+) False LOC110499725
XM_036956628.1 mRNA downstream 458967 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 458967 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 458967 4384016 ~ 4441236 (+) False LOC110516816
XM_036956636.1 mRNA downstream 526067 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 526070 4451119 ~ 4459751 (+) False si:dkey-39a18.1
TU1947414 other upstream 148393 3774039 ~ 3776261 (+) True G1701596
TU1947013 other upstream 1075051 2844704 ~ 2849603 (+) False G1701265
TU1946903 other upstream 1271035 2639340 ~ 2653619 (+) False LOC110519348
TU1945285 other upstream 2055100 1867694 ~ 1869554 (+) False G1699934
TU1947490 other downstream 7738 3932787 ~ 3936037 (+) False G1701654
TU1947491 other downstream 7738 3932787 ~ 3936037 (+) False G1701654
TU1947496 other downstream 8881 3933930 ~ 3936037 (+) False G1701654
TU1948666 other downstream 459007 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other downstream 469944 4394993 ~ 4395515 (+) True G1702554

Expression Profile