RNA id: TU1947510


Basic Information

Item Value
RNA id TU1947510
length 295
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1701663
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3955391 ~ 3955999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACGACATCACCATCTCTGTAGCTGGTACATGTAGAATTAGACAGTGGGTCTGACACTACAGACAGGAAGtcacacattaaacacacataACCTCTACACATAGAGTGGTCTGACAACACTACAGACAGGAAGTCACAGGCTAACATGCtaaatagatctgggaccaggctaacatgcTAAACAgagctgggaccaggctaacatgctaaactgatctgggaccaggctaacatgcTAAACAGTTCTGGGATCAGGCTAACAAGCTAAACAGatatgggaccaggctaacaaGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947504 lncRNA upstream 7014 3945271 ~ 3948377 (+) False G1701660
TU1947507 lncRNA upstream 9429 3944724 ~ 3945962 (+) False G1701660
TU1947506 lncRNA upstream 9429 3945271 ~ 3945962 (+) True G1701660
TU1947495 lncRNA upstream 19354 3935461 ~ 3936037 (+) True G1701654
TU1947485 lncRNA upstream 30342 3924654 ~ 3925049 (+) True G1701653
TU1947533 lncRNA downstream 57325 4013324 ~ 4016147 (+) False G1701682
TU1947532 lncRNA downstream 59278 4015277 ~ 4016147 (+) True G1701682
TU1947535 lncRNA downstream 60180 4016179 ~ 4016529 (+) True G1701684
TU1947543 lncRNA downstream 72792 4028791 ~ 4029973 (+) True G1701691
TU1947569 lncRNA downstream 143392 4099391 ~ 4099791 (+) True G1701717
XM_036956616.1 mRNA upstream 371893 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 392799 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 563797 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 717819 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 719035 2819887 ~ 3236356 (+) False LOC110499725
XM_036956628.1 mRNA downstream 428017 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 428017 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 428017 4384016 ~ 4441236 (+) False LOC110516816
XM_036956636.1 mRNA downstream 495117 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 495120 4451119 ~ 4459751 (+) False si:dkey-39a18.1
TU1947490 other upstream 19354 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 19354 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 19354 3933930 ~ 3936037 (+) False G1701654
TU1947414 other upstream 179130 3774039 ~ 3776261 (+) True G1701596
TU1947013 other upstream 1105788 2844704 ~ 2849603 (+) False G1701265
TU1948666 other downstream 428057 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other downstream 438994 4394993 ~ 4395515 (+) True G1702554
TU1949056 other downstream 1096448 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 1228475 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 1298166 5254165 ~ 5254885 (+) False G1702856

Expression Profile