RNA id: TU1948541


Basic Information

Item Value
RNA id TU1948541
length 359
lncRNA type intronic
GC content 0.42
exon number 4
gene id G1702428
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4099507 ~ 4100458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacagacagacagatgaattaaacccagtcagagagaaagacagacagacagatgaattaaacccagtaaaacccagtcagagagaaagacagacagacagatcaatacaacacagtaaaacacagtcagagagaaagacagacagacagacagatgaattaaacccagtaaaacccagtcagagagaaagacagacagacagatcaatacaacacagtaaaacccagGTAGAGAGAAAGCTATCAAGCCTGATGTTGGGTTGTAAATGACTCCATCCAGTATGCTATATATCATCGTGCATAGTTTTCCtgacctctctctctctctctctctctctctctctgtctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948511 lncRNA downstream 60558 4038479 ~ 4038949 (-) True G1702400
TU1948510 lncRNA downstream 60712 4038479 ~ 4038795 (-) False G1702400
TU1948498 lncRNA downstream 82112 4016066 ~ 4017395 (-) True G1702388
TU1948496 lncRNA downstream 82474 4014268 ~ 4017033 (-) True G1702387
TU1948495 lncRNA downstream 84821 4014268 ~ 4014686 (-) False G1702387
TU1948547 lncRNA upstream 14726 4115184 ~ 4116270 (-) True G1702434
TU1948565 lncRNA upstream 69799 4170257 ~ 4171110 (-) True G1702449
TU1948575 lncRNA upstream 94011 4194469 ~ 4195150 (-) True G1702457
TU1948591 lncRNA upstream 124260 4224718 ~ 4226289 (-) True G1702473
TU1948595 lncRNA upstream 131824 4232282 ~ 4232748 (-) True G1702477
XM_036956618.1 mRNA downstream 100980 3588530 ~ 3998527 (-) False LOC110499739
XM_036956617.1 mRNA downstream 100981 3588530 ~ 3998526 (-) False LOC110499739
trnav-uac-23 mRNA upstream 113434 4213892 ~ 4213965 (-) True trnav-uac-23
XM_036956639.1 mRNA upstream 511424 4611882 ~ 4634155 (-) False LOC110499732
XM_036956637.1 mRNA upstream 511424 4611882 ~ 4634590 (-) False LOC110499732
XR_005038459.1 mRNA upstream 511424 4611882 ~ 4634590 (-) False LOC110499732
XM_036956638.1 mRNA upstream 511424 4611882 ~ 4636535 (-) False LOC110499732
TU1948253 other downstream 510920 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 510920 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 510920 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 581130 3281102 ~ 3518377 (-) True G1702141
TU1948127 other downstream 869466 3229002 ~ 3230041 (-) True G1702117
TU1949213 other upstream 341791 4442249 ~ 4444919 (-) False G1702914
TU1949475 other upstream 831756 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 831756 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 831756 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 846140 4946598 ~ 4947411 (-) True G1703085

Expression Profile