RNA id: TU1947589


Basic Information

Item Value
RNA id TU1947589
length 432
lncRNA type intronic
GC content 0.40
exon number 3
gene id G1701733
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4148735 ~ 4149430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtattatcatacagtaggtagggtattatcatacagtaggtggggtattatcatacagtagGTGTggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtaaggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacagtaggtggggtattatcatacaggggtattatcatacagtaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1947569 lncRNA upstream 48944 4099391 ~ 4099791 (+) True G1701717
TU1947543 lncRNA upstream 118762 4028791 ~ 4029973 (+) True G1701691
TU1947535 lncRNA upstream 132206 4016179 ~ 4016529 (+) True G1701684
TU1947533 lncRNA upstream 132588 4013324 ~ 4016147 (+) False G1701682
TU1947532 lncRNA upstream 132588 4015277 ~ 4016147 (+) True G1701682
TU1947601 lncRNA downstream 32602 4182032 ~ 4182768 (+) True G1701744
TU1947604 lncRNA downstream 45111 4194541 ~ 4196167 (+) True G1701747
TU1947615 lncRNA downstream 69538 4218968 ~ 4219630 (+) True G1701755
TU1947619 lncRNA downstream 82848 4232278 ~ 4232748 (+) True G1701759
TU1947634 lncRNA downstream 98124 4247554 ~ 4250590 (+) True G1701763
XM_036956616.1 mRNA upstream 565237 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 586143 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 757141 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 911163 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 912379 2819887 ~ 3236356 (+) False LOC110499725
XM_036956628.1 mRNA downstream 234586 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 234586 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 234586 4384016 ~ 4441236 (+) False LOC110516816
XM_036956636.1 mRNA downstream 301686 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 301689 4451119 ~ 4459751 (+) False si:dkey-39a18.1
TU1947490 other upstream 212698 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 212698 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 212698 3933930 ~ 3936037 (+) False G1701654
TU1947414 other upstream 372474 3774039 ~ 3776261 (+) True G1701596
TU1947013 other upstream 1299132 2844704 ~ 2849603 (+) False G1701265
TU1948666 other downstream 234626 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other downstream 245563 4394993 ~ 4395515 (+) True G1702554
TU1949056 other downstream 903017 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 1035044 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 1104735 5254165 ~ 5254885 (+) False G1702856

Expression Profile