RNA id: TU1948645


Basic Information

Item Value
RNA id TU1948645
length 774
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1702516
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4317014 ~ 4317787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actaagctaaggaccctaggaataaacacctccctctgcaactggatcctggacctcctgacgggccgcccccaggtggtaaggggcccctcaggggtgtgtgctcagtcccctcctgtacgccCTACTCACTCATAACTGCGTGGCTACGCACaactccatcaccatcattaagtttgccgatgacacaacagtggtaggcctgatcaccgacaacaacgagacagcctatagggaggaggtcagagacctggccgtgtggtgccaggacaacaacctctccctcaacgtgatcaagacaaaggaggtgattgtggactacaggaaaaggaggaccgagcacgccccattctcatcgacggggctgtagtggagcaggttgagagcttcaagttccttggtgtccacatcaccaactaacatggtccaagcacaccaagacagtcgtgaagaggtcacgacaaaacctattccccctcaggagactgaaaagatttggcattggtcttcagatcctcaaacggttctacagctgcaccatcgagagcatcctgactggttgcatccctgcctggttgcatcacagcctggtatggcaactgctcggcctccgaccacaaggcactacagagggtagtgcgaacggcccagttcatcactggggccaagcttcctgccatccaggacctctataccagacggtgtcagaggaaggccctaaaaattgtcaaagactccagccactctagtaatagactgttctctctgctaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948643 lncRNA downstream 7474 4309310 ~ 4309540 (-) True G1702514
TU1948639 lncRNA downstream 12584 4303458 ~ 4304430 (-) True G1702510
TU1948636 lncRNA downstream 15108 4301405 ~ 4301906 (-) True G1702508
TU1948615 lncRNA downstream 64771 4251220 ~ 4252243 (-) True G1702487
TU1948595 lncRNA downstream 84266 4232282 ~ 4232748 (-) True G1702477
TU1948658 lncRNA upstream 10621 4328408 ~ 4329245 (-) False G1702528
TU1948659 lncRNA upstream 10621 4328408 ~ 4329245 (-) True G1702528
TU1948663 lncRNA upstream 15324 4333111 ~ 4333348 (-) True G1702532
TU1949162 lncRNA upstream 25044 4342831 ~ 4343031 (-) True G1702876
TU1949167 lncRNA upstream 30654 4348441 ~ 4348753 (-) True G1702879
XM_036956623.1 mRNA downstream 10250 3588530 ~ 4306764 (-) False LOC110499739
XM_036956624.1 mRNA downstream 10260 3588530 ~ 4306754 (-) False LOC110499739
trnav-uac-23 mRNA downstream 103049 4213892 ~ 4213965 (-) True trnav-uac-23
XM_036956618.1 mRNA downstream 318487 3588530 ~ 3998527 (-) False LOC110499739
XM_036956621.1 mRNA downstream 318488 3588530 ~ 3998526 (-) False LOC110499739
XM_036956639.1 mRNA upstream 294095 4611882 ~ 4634155 (-) False LOC110499732
XM_036956637.1 mRNA upstream 294095 4611882 ~ 4634590 (-) False LOC110499732
XR_005038459.1 mRNA upstream 294095 4611882 ~ 4634590 (-) False LOC110499732
XM_036956638.1 mRNA upstream 294095 4611882 ~ 4636535 (-) False LOC110499732
XM_036956640.1 mRNA upstream 375096 4692883 ~ 4704523 (-) False LOC110516460
TU1948253 other downstream 728427 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 728427 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 728427 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 798637 3281102 ~ 3518377 (-) True G1702141
TU1948127 other downstream 1086973 3229002 ~ 3230041 (-) True G1702117
TU1949213 other upstream 124462 4442249 ~ 4444919 (-) False G1702914
TU1949475 other upstream 614427 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 614427 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 614427 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 628811 4946598 ~ 4947411 (-) True G1703085

Expression Profile