RNA id: TU1948659



Basic Information


Item Value
RNA id TU1948659
length 722
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G1702528
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4328408 ~ 4329245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCAGCTCTCGCtctctgctcctgctgctgcGTTGGGATCCAGGGCCTCCGTGCAGAGTCCGTCTGAATTTAACTGTGAAATGATCTGCTCAGACCTGCTCAGTAGGACCTGgcaaacaagcatttcgctacacccgcaataacatctgctaaatgtgttaaaataacatttatttagaAATTaggattctgtctctctctctctcttttcattgtgattctgtctttctctcttttcattgtgattctctctctctctctcttttcattgtgattctctctctctctcttttcattgtgattctctctctctctcttttcattgtgattctctctctctcttttcattgtgattctgtctctctctctcttttcattgtgattctctctctctcttttcattgtgattctctctctctcttttcattgtgattctctctctctcttttcattgtgattctgtctctctctctctcttttcattgtgattctgtctctttctctcttttcattgtgattctgtctctctctcttttcattgtgattctgtctctctctcttttcattgtgattctgtctctctctcttttcattgtgattctgtctctctctctctttccattgtgattctgtctttctctcttttcattgtgattctgtctttctctcttttcattgtgattctgtctctctctctcttttcattatgattctgtctctctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1948645 lncRNA downstream 10621 4317014 ~ 4317787 (-) True G1702516
TU1948643 lncRNA downstream 18868 4309310 ~ 4309540 (-) True G1702514
TU1948639 lncRNA downstream 23978 4303458 ~ 4304430 (-) True G1702510
TU1948636 lncRNA downstream 26502 4301405 ~ 4301906 (-) True G1702508
TU1948615 lncRNA downstream 76165 4251220 ~ 4252243 (-) True G1702487
TU1948663 lncRNA upstream 3866 4333111 ~ 4333348 (-) True G1702532
TU1949162 lncRNA upstream 13586 4342831 ~ 4343031 (-) True G1702876
TU1949167 lncRNA upstream 19196 4348441 ~ 4348753 (-) True G1702879
TU1949171 lncRNA upstream 34036 4363281 ~ 4364702 (-) True G1702882
TU1949174 lncRNA upstream 45544 4374789 ~ 4375004 (-) True G1702884
XM_036956623.1 mRNA downstream 21644 3588530 ~ 4306764 (-) False LOC110499739
XM_036956624.1 mRNA downstream 21654 3588530 ~ 4306754 (-) False LOC110499739
trnav-uac-23 mRNA downstream 114443 4213892 ~ 4213965 (-) True trnav-uac-23
XM_036956618.1 mRNA downstream 329881 3588530 ~ 3998527 (-) False LOC110499739
XM_036956621.1 mRNA downstream 329882 3588530 ~ 3998526 (-) False LOC110499739
XM_036956639.1 mRNA upstream 282637 4611882 ~ 4634155 (-) False LOC110499732
XM_036956637.1 mRNA upstream 282637 4611882 ~ 4634590 (-) False LOC110499732
XR_005038459.1 mRNA upstream 282637 4611882 ~ 4634590 (-) False LOC110499732
XM_036956638.1 mRNA upstream 282637 4611882 ~ 4636535 (-) False LOC110499732
XM_036956640.1 mRNA upstream 363638 4692883 ~ 4704523 (-) False LOC110516460
TU1948253 other downstream 739821 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 739821 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 739821 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 810031 3281102 ~ 3518377 (-) True G1702141
TU1948127 other downstream 1098367 3229002 ~ 3230041 (-) True G1702117
TU1949213 other upstream 113004 4442249 ~ 4444919 (-) False G1702914
TU1949475 other upstream 602969 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 602969 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 602969 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 617353 4946598 ~ 4947411 (-) True G1703085

Expression Profile