RNA id: TU1948674


Basic Information

Item Value
RNA id TU1948674
length 225
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1702539
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4350917 ~ 4351141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatttaacattatccagatactgactgtctatagcagcttcccaccagaatggtcTTTAGGTGAAgtagatgaacctgtagccatattacttcaacagtatttaacatgagatcctctctaatctttacaggaatgtggttctgaatataaacagctaCACCTCCcccattggcatttctgtcttttctgtagatgttacaaccatgtattgctaccactgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948657 lncRNA upstream 21937 4328012 ~ 4328980 (+) True G1702527
TU1948654 lncRNA upstream 26117 4324556 ~ 4324800 (+) True G1702525
TU1948644 lncRNA upstream 38006 4312598 ~ 4312911 (+) True G1702515
TU1948642 lncRNA upstream 41378 4309336 ~ 4309539 (+) True G1702513
TU1947646 lncRNA upstream 58196 4292388 ~ 4292721 (+) True G1701775
TU1948683 lncRNA downstream 23652 4374793 ~ 4374993 (+) True G1702546
TU1948696 lncRNA downstream 47380 4398521 ~ 4399529 (+) True G1702555
TU1948699 lncRNA downstream 56058 4407199 ~ 4407873 (+) True G1702557
TU1948701 lncRNA downstream 60536 4411677 ~ 4412046 (+) True G1702559
TU1948702 lncRNA downstream 64021 4415162 ~ 4415754 (+) False G1702560
XM_036956616.1 mRNA upstream 767419 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 788325 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 959323 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 1113345 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 1114561 2819887 ~ 3236356 (+) False LOC110499725
XM_036956628.1 mRNA downstream 32875 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA downstream 32875 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA downstream 32875 4384016 ~ 4441236 (+) False LOC110516816
XM_036956636.1 mRNA downstream 99975 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 99978 4451119 ~ 4459751 (+) False si:dkey-39a18.1
TU1947490 other upstream 414880 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 414880 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 414880 3933930 ~ 3936037 (+) False G1701654
TU1947414 other upstream 574656 3774039 ~ 3776261 (+) True G1701596
TU1947013 other upstream 1501314 2844704 ~ 2849603 (+) False G1701265
TU1948666 other downstream 32915 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other downstream 43852 4394993 ~ 4395515 (+) True G1702554
TU1949056 other downstream 701306 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 833333 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 903024 5254165 ~ 5254885 (+) False G1702856

Expression Profile