RNA id: TU1948696


Basic Information

Item Value
RNA id TU1948696
length 579
lncRNA type intronic
GC content 0.44
exon number 3
gene id G1702555
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4398521 ~ 4399529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagtgatggtgttgtaggtaatgaactgatggactatcccctctagtgatggtgttaTGGGTAATGATCTGATGGActatcccctctagtgatggtgttgtaggtaatgaactgatggactatcccctctagtgatggtgttataggtaatgaactgatggactatcccctctagtgatggtgttgtagGTAATGATCTGATGGActatcccctctagtgatggtgttataggtaatgaactgatggactatcccctctagtgatggtgttaTAGgtaatgaactgatggactatcccctctagtgatggtgttatgggtaatgaactgatggactatcccctctagtgatggtgttgtagtgtgtTAGGTAATGGACTGATGGActatcccctctagtgatggtgttatgggtaatgaactgatggactatcccctctagtgatggtgttatgggtaatgaactgatggactatcccctctagtgatggtgttataggtaatgaactgatggactatcccctctagtgatggtgttaTGGGTAATGATCTGATGGActatcccctctagtgatggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948683 lncRNA upstream 23528 4374793 ~ 4374993 (+) True G1702546
TU1948674 lncRNA upstream 47380 4350917 ~ 4351141 (+) True G1702539
TU1948657 lncRNA upstream 69541 4328012 ~ 4328980 (+) True G1702527
TU1948654 lncRNA upstream 73721 4324556 ~ 4324800 (+) True G1702525
TU1948644 lncRNA upstream 85610 4312598 ~ 4312911 (+) True G1702515
TU1948699 lncRNA downstream 7670 4407199 ~ 4407873 (+) True G1702557
TU1948701 lncRNA downstream 12148 4411677 ~ 4412046 (+) True G1702559
TU1948702 lncRNA downstream 15633 4415162 ~ 4415754 (+) False G1702560
TU1948703 lncRNA downstream 15633 4415162 ~ 4415754 (+) True G1702560
TU1948704 lncRNA downstream 16266 4415795 ~ 4417355 (+) True G1702561
XM_036956616.1 mRNA upstream 815023 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 835929 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 1006927 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 1160949 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 1162165 2819887 ~ 3236356 (+) False LOC110499725
XM_036956636.1 mRNA downstream 51587 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 51590 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA downstream 51590 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956633.1 mRNA downstream 51590 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956634.1 mRNA downstream 51590 4451119 ~ 4459751 (+) True si:dkey-39a18.1
TU1948694 other upstream 3006 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 462484 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 462484 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 462484 3933930 ~ 3936037 (+) False G1701654
TU1947414 other upstream 622260 3774039 ~ 3776261 (+) True G1701596
TU1949056 other downstream 652918 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 784945 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 854636 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 854636 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 1186002 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile