RNA id: TU1948699


Basic Information

Item Value
RNA id TU1948699
length 233
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1702557
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4407199 ~ 4407873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGGAATTCACTACTAGATGGAATTCACTACTAGGTGGAATTCACTACTAGATGGAATTCACTACTAGATGGAATTCACTACTAGATGGAATTCACTACTAGATGTTTACCATCAGATATCTTCTAATGTCTTTCTGCCAGAAGTCACAGAGCTCTGGAGGTTTCTGAACAGCGGCCATTTTGTCCCTGTGCTTCCTGCCTAGTGTGTTGTCTCTCCTCCGttcttctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948696 lncRNA upstream 7670 4398521 ~ 4399529 (+) True G1702555
TU1948683 lncRNA upstream 32206 4374793 ~ 4374993 (+) True G1702546
TU1948674 lncRNA upstream 56058 4350917 ~ 4351141 (+) True G1702539
TU1948657 lncRNA upstream 78219 4328012 ~ 4328980 (+) True G1702527
TU1948654 lncRNA upstream 82399 4324556 ~ 4324800 (+) True G1702525
TU1948701 lncRNA downstream 3804 4411677 ~ 4412046 (+) True G1702559
TU1948702 lncRNA downstream 7289 4415162 ~ 4415754 (+) False G1702560
TU1948703 lncRNA downstream 7289 4415162 ~ 4415754 (+) True G1702560
TU1948704 lncRNA downstream 7922 4415795 ~ 4417355 (+) True G1702561
TU1948707 lncRNA downstream 20915 4428788 ~ 4429527 (+) True G1702563
XM_036956616.1 mRNA upstream 823701 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 844607 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 1015605 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 1169627 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 1170843 2819887 ~ 3236356 (+) False LOC110499725
XM_036956636.1 mRNA downstream 43243 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 43246 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA downstream 43246 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956633.1 mRNA downstream 43246 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956634.1 mRNA downstream 43246 4451119 ~ 4459751 (+) True si:dkey-39a18.1
TU1948666 other upstream 6218 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 11684 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 471162 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 471162 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 471162 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 644574 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 776601 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 846292 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 846292 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 1177658 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile