RNA id: TU1948704


Basic Information

Item Value
RNA id TU1948704
length 562
lncRNA type intronic
GC content 0.36
exon number 3
gene id G1702561
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4415795 ~ 4417355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtattagtcagtatgtccatatctcctagtggtagtatgtattagtcagtatgtctatatctcctagtggtagtatgtattagtcagtgtgtattagtcagtatgtctatatctcctagtggtagtatgtattagtcagtgtgtattagtcagtatgtattagtcagtatgtgttagtcagtatgtgttagtCAGCATGTGTTAGTCAGCATGTGTTAGTCAGCATGTGTTAGTCAGCATGTGTTAGTCAGCATGTGTTAGTCAGCATGTGTTAGTCAGCATGTGTTAGTCAGCATGtgttagtcagtatgtattagtcagtggTATGTCTATATCTCCTAGTggtagtatgtattagtcagtggTATGTCTATCTCCTAGTggtagtatgtattagtcagtggTATGTCTATATCTCCTAGTggtagtatgtattagtcagtataTCTATATCTCCTAGTTgtagtatgtattagtcagtatgtattagtcagtatgtattagtcagtatgtattagtcagtggTATGTCTATATCTCCTAGTggtagtatgtattagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948702 lncRNA upstream 41 4415162 ~ 4415754 (+) False G1702560
TU1948703 lncRNA upstream 41 4415162 ~ 4415754 (+) True G1702560
TU1948701 lncRNA upstream 3749 4411677 ~ 4412046 (+) True G1702559
TU1948699 lncRNA upstream 7922 4407199 ~ 4407873 (+) True G1702557
TU1948696 lncRNA upstream 16266 4398521 ~ 4399529 (+) True G1702555
TU1948707 lncRNA downstream 11433 4428788 ~ 4429527 (+) True G1702563
TU1948677 lncRNA downstream 24897 4442252 ~ 4442754 (+) True G1702542
TU1948680 lncRNA downstream 26238 4443593 ~ 4444120 (+) False G1702543
TU1948679 lncRNA downstream 26351 4443706 ~ 4444240 (+) True G1702543
TU1948728 lncRNA downstream 61501 4478856 ~ 4479378 (+) True G1702579
XM_036956616.1 mRNA upstream 832297 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 853203 3543652 ~ 3562592 (+) True irak3
XM_036956615.1 mRNA upstream 1024201 3385456 ~ 3391594 (+) True LOC110516257
XR_005038456.1 mRNA upstream 1178223 2819887 ~ 3237572 (+) True LOC110499725
XM_036956614.1 mRNA upstream 1179439 2819887 ~ 3236356 (+) False LOC110499725
XM_036956636.1 mRNA downstream 33761 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 33764 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA downstream 33764 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956633.1 mRNA downstream 33764 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956634.1 mRNA downstream 33764 4451119 ~ 4459751 (+) True si:dkey-39a18.1
TU1948666 other upstream 14814 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 20280 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 479758 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 479758 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 479758 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 635092 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 767119 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 836810 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 836810 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 1168176 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile