RNA id: TU1949213


Basic Information

Item Value
RNA id TU1949213
length 2671
RNA type TUCP
GC content 0.43
exon number 1
gene id G1702914
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4442249 ~ 4444919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatttcttgttaaactatagttttggcaagtcggttacaacatctactttgtgcatgacacaagtcattattccaacaattgtttatagattatttcactgtattacaattccagtgggtcagaagttcacatacactaagttgactgtgcctttaaacagcttagaaaattccagaaaattatgtcattgctttagaagcttctgataggctaattgacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctatcttcaaactcagtgcctctttcccatgacatcatgggaaaatcaaaagaaatcagtcaaaaatggtagacctccacaagtctggttcatccttgggagcaattctcaaacacctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacacagccgtcataccgcttaggaaggagactcgttctgtctcctggagattaacgtactttggagcgaaaggtgcaaatcaatcccagagcaacagcaaaggaccttgtgaagattctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctttatcgacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggtttacagctgcacatggggacaaatatcgtactttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttatgtttgaagggaaaagggggaggcttgcaagccgaagaacaccatcccaaccgtgaagcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggagagactggtgcacttcacaaaatagatggcatcatgaggaaaggaaaatgtggatatattgaagcagcatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttacaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacgaagtcctgacctcaatcctacattaaatttgtaggcagaactgaaaaagcgtgtgtgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctacccgaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactcattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaataattttctctactattatttgacatttcacattcttaaaataaagtagtgatcctaactgacctataacagggaatttttacacaGATTAAAttgtgtcaggaattgtgaaaaactgagtttaaatgtatttggctcaggtgtatgtaaacttcccacttcaaacTGTATCTATACATGTAAACCTATAGCTTCTTATATCTACACATATAAACCTGTAGTCAGTGTATAAGCTATACTCCTGCACCTTCCTCTGCCGTGCACATGGAGCTCACGTCAACAGCAGCCACGTCGGACTCCTTACTGTTACGGTTCCCTTTCTCAGTTCCTTCAGGAAGGACTGTCTCTCAGTGGGGGGGGACATCAGACTGCCTCTCAGTGGGGGGACATCAGACTGCCTCTCAGTGGGGGGGACATCAGACTGCCTCTCAGTGGGGGGGACATCAGACTGATGGAAGGACTGCCTCTCAGTGGGGGGACATCAGACTGATGGTCATTTTGTTGAAACAGATAAGAGAGAGCCCTGAAAAAGGTTTACCTTTCTTCCCCCtccaaagcagtgcactatatagggaagagggaggCATTTGTGACTCACCTGACAGGATAAGGAATAGAGCAGTAACATCAGCTCCAGGTAcaccccccaccccaaaaaaaaataatgtaatgaGATGTTTCACTATTGGCTGTTTTAACTTCTGTGTTTACTCATAAcctctgtacattagtgagggtaGAGACTCTACACCAAGGAATACATAACGTGAGGCTTGTCAGTTTAAACTAAGGTCTACAACCGTTGTATTGGGCGCGTGGGACAAATACAATTTGCTGTTGCTGGATCTGGAGGCTAAGAAATCAGTTCACGCTTTTTATTCACAAAATGTACTTCTGTCCACATACAGAGAGGTCTGTTCCTAATGCTGGGCTTTCACCCAAGGTACGGCGCTGCCCTGTCGAAGACACGCTCCTTCCCTTATCGGGTTGTTTTGAACATGCTAATGGAGTCAAAAGGTCAAATGACCTCTGCTCAACCAACCACCAGTCGACGCAAGAGACATGTACGAATTAAAAATGAgggcaaaaaaataataatttctaaATATTTATCCACTTACTCAACAGAACACCCTGTCCTGACCATGTCTCTCACACCTCTTTAATAGAAGATTTCTGAACACAATTTTTAAACATCACCTCTTCTGATCGTGTCAATCTCCCCCCCCACCAAACAAGCTTTGTTCTACCCAACAGCCGACAAGACAaataaaacacagataatgacatTCAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949201 lncRNA downstream 9859 4431962 ~ 4432390 (-) True G1702906
TU1949198 lncRNA downstream 10396 4429807 ~ 4431853 (-) False G1702905
TU1949197 lncRNA downstream 10396 4431279 ~ 4431853 (-) True G1702905
TU1949179 lncRNA downstream 24306 4414701 ~ 4417943 (-) True G1702889
TU1949174 lncRNA downstream 67245 4374789 ~ 4375004 (-) True G1702884
TU1949215 lncRNA upstream 576 4445495 ~ 4445715 (-) True G1702915
TU1949216 lncRNA upstream 1558 4446477 ~ 4446974 (-) True G1702916
TU1949217 lncRNA upstream 3082 4448001 ~ 4448842 (-) True G1702917
TU1949246 lncRNA upstream 45029 4489948 ~ 4490192 (-) True G1702932
TU1949260 lncRNA upstream 77524 4522443 ~ 4522963 (-) True G1702941
XM_036956623.1 mRNA downstream 135485 3588530 ~ 4306764 (-) False LOC110499739
XM_036956624.1 mRNA downstream 135495 3588530 ~ 4306754 (-) False LOC110499739
trnav-uac-23 mRNA downstream 228284 4213892 ~ 4213965 (-) True trnav-uac-23
XM_036956618.1 mRNA downstream 443722 3588530 ~ 3998527 (-) False LOC110499739
XM_036956617.1 mRNA downstream 443723 3588530 ~ 3998526 (-) False LOC110499739
XM_036956639.1 mRNA upstream 166963 4611882 ~ 4634155 (-) False LOC110499732
XM_036956637.1 mRNA upstream 166963 4611882 ~ 4634590 (-) False LOC110499732
XR_005038459.1 mRNA upstream 166963 4611882 ~ 4634590 (-) False LOC110499732
XM_036956638.1 mRNA upstream 166963 4611882 ~ 4636535 (-) False LOC110499732
XM_036956640.1 mRNA upstream 247964 4692883 ~ 4704523 (-) False LOC110516460
TU1948253 other downstream 853662 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 853662 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 853662 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 923872 3281102 ~ 3518377 (-) True G1702141
TU1948127 other downstream 1212208 3229002 ~ 3230041 (-) True G1702117
TU1949475 other upstream 487295 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 487295 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 487295 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 501679 4946598 ~ 4947411 (-) True G1703085
TU1949495 other upstream 517063 4961982 ~ 4966019 (-) False LOC118936570

Expression Profile