RNA id: TU1948679


Basic Information

Item Value
RNA id TU1948679
length 535
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1702543
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4443593 ~ 4444240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcacacacgctttttcagttctgcctacaaatttaatgtaggattgaggtcaggacttcgtgatggccactccaataccttgactttgttgtccttaagccattttgccacaactttgtaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgagatgctgcttcaatatatccacattttcctttcctcatgatgccatctattttgtgaagtgcaccagtctctcctgcagcaaagcacccccacaacatgatgctgccacccccgtgcttcacggttgggatggtgttcttcggcttgcaagcctcccccttttcccttcaaacataacgatggtcattatggccaaacagttctatttttgtttcatcagaccagaggacatttctccaaaaagtacgatatttgtccccatgtgcagctgtaaaccgtagtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948677 lncRNA upstream 952 4442252 ~ 4442754 (+) True G1702542
TU1948707 lncRNA upstream 14179 4428788 ~ 4429527 (+) True G1702563
TU1948704 lncRNA upstream 26351 4415795 ~ 4417355 (+) True G1702561
TU1948702 lncRNA upstream 27952 4415162 ~ 4415754 (+) False G1702560
TU1948728 lncRNA downstream 34616 4478856 ~ 4479378 (+) True G1702579
TU1948730 lncRNA downstream 46448 4490688 ~ 4490921 (+) True G1702581
TU1948733 lncRNA downstream 54160 4498400 ~ 4499016 (+) True G1702584
TU1948744 lncRNA downstream 59739 4503979 ~ 4504212 (+) True G1702586
TU1948745 lncRNA downstream 62302 4506542 ~ 4506886 (+) True G1702587
XM_036956628.1 mRNA upstream 2470 4384016 ~ 4441236 (+) False LOC110516816
XM_036956629.1 mRNA upstream 2470 4384016 ~ 4441236 (+) False LOC110516816
XM_036956630.1 mRNA upstream 2470 4384016 ~ 4441236 (+) False LOC110516816
XM_036956616.1 mRNA upstream 860208 3565639 ~ 3583498 (+) True helb
NM_001281404.1 mRNA upstream 881114 3543652 ~ 3562592 (+) True irak3
XM_036956636.1 mRNA downstream 6876 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XM_036956631.1 mRNA downstream 6879 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA downstream 6879 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956633.1 mRNA downstream 6879 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956634.1 mRNA downstream 6879 4451119 ~ 4459751 (+) True si:dkey-39a18.1
TU1948666 other upstream 42725 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 48191 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 507669 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 507669 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 507669 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 608207 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 740234 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 809925 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 809925 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 1141291 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile