RNA id: TU1948745


Basic Information

Item Value
RNA id TU1948745
length 345
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1702587
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4506542 ~ 4506886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggggtggactagtggttagaggcagggtagcctagtggttaggggcagggtggcctagtggttagaggcagggtagcctagtggttagaggcagggtagcctagtggttagaggcagggtagcctagtggttagaggcagggtagcctagtggttagaggcagggtagcctagtggttggagtgttggactagtaaccaaaaggttgccagttcaaatccctgagctgacaaggtttaaatctgtcgttctgcccctgaacaggccgttaacccactgttcctaggccagttaacccactgttcctagaccagttaacccactgttcctaggccgtcattgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948744 lncRNA upstream 2330 4503979 ~ 4504212 (+) True G1702586
TU1948733 lncRNA upstream 7526 4498400 ~ 4499016 (+) True G1702584
TU1948730 lncRNA upstream 15621 4490688 ~ 4490921 (+) True G1702581
TU1948728 lncRNA upstream 27164 4478856 ~ 4479378 (+) True G1702579
TU1948679 lncRNA upstream 62302 4443706 ~ 4444240 (+) True G1702543
TU1948750 lncRNA downstream 5378 4512264 ~ 4512470 (+) True G1702591
TU1948752 lncRNA downstream 11902 4518788 ~ 4519009 (+) True G1702593
TU1948783 lncRNA downstream 42869 4549755 ~ 4550102 (+) True G1702608
TU1948794 lncRNA downstream 69473 4576359 ~ 4576829 (+) True G1702618
TU1948755 lncRNA downstream 98175 4605061 ~ 4607007 (+) False G1702594
XM_036956636.1 mRNA upstream 31451 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XR_005038458.1 mRNA upstream 44971 4459746 ~ 4461571 (+) True LOC118942831
XM_036956631.1 mRNA upstream 46791 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA upstream 46791 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956633.1 mRNA upstream 46791 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XR_005038439.1 mRNA downstream 345103 4851989 ~ 4852917 (+) True LOC118942787
XM_036956648.1 mRNA downstream 491340 4998226 ~ 5111935 (+) False LOC118936571
XM_036956649.1 mRNA downstream 564687 5071573 ~ 5111935 (+) True LOC118936571
XM_036956650.1 mRNA downstream 613234 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 666774 5173660 ~ 5179939 (+) False LOC118942832
TU1948666 other upstream 105561 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 111027 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 570505 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 570505 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 570505 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 545561 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 677588 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 747279 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 747279 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 1078645 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile