RNA id: TU1949287


Basic Information

Item Value
RNA id TU1949287
length 658
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1702956
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4571088 ~ 4571844 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATGAACAGAGTATGGAGACACAGCAGGGATCTCTTCTAAAGAGAAATCATGTTTCACCTTTGAAAGGCTTTTCACCACTTCTCAACCATGGACAATCACTTccctttttgatttgatttatttcacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtagactagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtagactagttgagaacacctttatttaaccaggtagactagttgagaacacctttatttaaccaggtagactagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtagactagttgagaacacctttatttaaccaggtagactagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccagggaggccagttgagaacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949274 lncRNA downstream 21403 4549195 ~ 4549685 (-) True G1702949
TU1949267 lncRNA downstream 33381 4534067 ~ 4537707 (-) False G1702944
TU1949269 lncRNA downstream 33381 4534067 ~ 4537707 (-) True G1702944
TU1949261 lncRNA downstream 40258 4528767 ~ 4530830 (-) True G1702942
TU1949260 lncRNA downstream 48125 4522443 ~ 4522963 (-) True G1702941
TU1949288 lncRNA upstream 879 4572723 ~ 4574498 (-) True G1702957
TU1949299 lncRNA upstream 26033 4597877 ~ 4600067 (-) True G1702964
TU1949283 lncRNA upstream 33216 4605060 ~ 4607012 (-) True G1702953
TU1949332 lncRNA upstream 56421 4628265 ~ 4628725 (-) True G1702978
TU1949315 lncRNA upstream 64503 4636347 ~ 4636619 (-) True LOC110499732
XM_036956623.1 mRNA downstream 264324 3588530 ~ 4306764 (-) False LOC110499739
XM_036956624.1 mRNA downstream 264334 3588530 ~ 4306754 (-) False LOC110499739
trnav-uac-23 mRNA downstream 357123 4213892 ~ 4213965 (-) True trnav-uac-23
XM_036956618.1 mRNA downstream 572561 3588530 ~ 3998527 (-) False LOC110499739
XM_036956621.1 mRNA downstream 572562 3588530 ~ 3998526 (-) False LOC110499739
XM_036956639.1 mRNA upstream 40038 4611882 ~ 4634155 (-) False LOC110499732
XM_036956637.1 mRNA upstream 40038 4611882 ~ 4634590 (-) False LOC110499732
XR_005038459.1 mRNA upstream 40038 4611882 ~ 4634590 (-) False LOC110499732
XM_036956638.1 mRNA upstream 40038 4611882 ~ 4636535 (-) False LOC110499732
XM_036956640.1 mRNA upstream 121039 4692883 ~ 4704523 (-) False LOC110516460
TU1949213 other downstream 126169 4442249 ~ 4444919 (-) False G1702914
TU1948253 other downstream 982501 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 982501 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 982501 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 1052711 3281102 ~ 3518377 (-) True G1702141
TU1949475 other upstream 360370 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 360370 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 360370 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 374754 4946598 ~ 4947411 (-) True G1703085
TU1949495 other upstream 390138 4961982 ~ 4966019 (-) False LOC118936570

Expression Profile