RNA id: TU1949283


Basic Information

Item Value
RNA id TU1949283
length 1808
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1702953
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4605060 ~ 4607012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCAACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCGAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCAACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCAACTACACAACTTTTAGAAGACAGTCTCTAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCAACTGCACAACTTTTAGAAGACAGTCTCTAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCAACTACACAACTTTTAGAAGACAGTCTCTAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTACTACTACACAACTTTTAGAAGACTGTCTCGAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTACTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTACTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTATACAACTTTTAGAAGACAGTCTCTAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCGAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGCTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTATACAACTTTTAGAAGACAGTCTCGAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTACTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTCTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTACTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTACTACTACACAACTTTTAGAAGACAGTCTCTAGAGTTACTACTACACAACTTTTAGAAGAaggaagttaaaaaaaaaaaaacagaatctTGAACCGAGCAACAACGTTGATAGATGTTAGTACTCTTTACCACAGCCACGTACGCTGTACATATGTGAAATTTGCGATGGGTTCAATGTGGATTTGTGTACATATGTATAATGTCTTTGCCTCTGGTGAAATGCTGCTGGAAGCACTACATGAATGTTGTAGTGGGTTTTTAAGCTCGGTCAGTTTTACTATAGTGTATGTAATGTACAGCTAATGGAAGGTCACACTTTTTTTTGTGATTATTTGTTAAATTTTATTGTTGTGGCCGGGAAAATGTTATTAAATAAAAAAGTTTTAAGGTCCATCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949299 lncRNA downstream 4993 4597877 ~ 4600067 (-) True G1702964
TU1949288 lncRNA downstream 30562 4572723 ~ 4574498 (-) True G1702957
TU1949287 lncRNA downstream 33216 4571088 ~ 4571844 (-) True G1702956
TU1949274 lncRNA downstream 55375 4549195 ~ 4549685 (-) True G1702949
TU1949267 lncRNA downstream 67353 4534067 ~ 4537707 (-) False G1702944
TU1949332 lncRNA upstream 21253 4628265 ~ 4628725 (-) True G1702978
TU1949315 lncRNA upstream 29335 4636347 ~ 4636619 (-) True LOC110499732
TU1949342 lncRNA upstream 53582 4660594 ~ 4660807 (-) True G1702988
TU1949362 lncRNA upstream 61665 4668677 ~ 4672288 (-) False G1702991
TU1949364 lncRNA upstream 61665 4668677 ~ 4672288 (-) True G1702991
XM_036956623.1 mRNA downstream 298296 3588530 ~ 4306764 (-) False LOC110499739
XM_036956624.1 mRNA downstream 298306 3588530 ~ 4306754 (-) False LOC110499739
trnav-uac-23 mRNA downstream 391095 4213892 ~ 4213965 (-) True trnav-uac-23
XM_036956618.1 mRNA downstream 606533 3588530 ~ 3998527 (-) False LOC110499739
XM_036956621.1 mRNA downstream 606534 3588530 ~ 3998526 (-) False LOC110499739
XM_036956639.1 mRNA upstream 4870 4611882 ~ 4634155 (-) False LOC110499732
XM_036956637.1 mRNA upstream 4870 4611882 ~ 4634590 (-) False LOC110499732
XR_005038459.1 mRNA upstream 4870 4611882 ~ 4634590 (-) False LOC110499732
XM_036956638.1 mRNA upstream 4870 4611882 ~ 4636535 (-) False LOC110499732
XM_036956640.1 mRNA upstream 85871 4692883 ~ 4704523 (-) False LOC110516460
TU1949213 other downstream 160141 4442249 ~ 4444919 (-) False G1702914
TU1948253 other downstream 1016473 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 1016473 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 1016473 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 1086683 3281102 ~ 3518377 (-) True G1702141
TU1949475 other upstream 325202 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 325202 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 325202 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 339586 4946598 ~ 4947411 (-) True G1703085
TU1949495 other upstream 354970 4961982 ~ 4966019 (-) False LOC118936570

Expression Profile