RNA id: TU1948756


Basic Information

Item Value
RNA id TU1948756
length 1334
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1702594
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4605061 ~ 4607007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGATGGACCTTAAAACTTTTTTATTTAATAACATTTTCCCGGCCACAACAATAAAATTTAACAAATAATCACAAAAAAAAGTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgtttttttttttttaacttcctTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948794 lncRNA upstream 28232 4576359 ~ 4576829 (+) True G1702618
TU1948783 lncRNA upstream 54959 4549755 ~ 4550102 (+) True G1702608
TU1948752 lncRNA upstream 86052 4518788 ~ 4519009 (+) True G1702593
TU1948750 lncRNA upstream 92591 4512264 ~ 4512470 (+) True G1702591
TU1948745 lncRNA upstream 98175 4506542 ~ 4506886 (+) True G1702587
TU1948809 lncRNA downstream 15856 4622863 ~ 4623198 (+) True G1702632
TU1948814 lncRNA downstream 19834 4626841 ~ 4627627 (+) True G1702636
TU1948823 lncRNA downstream 40037 4647044 ~ 4647549 (+) True G1702643
TU1948824 lncRNA downstream 42415 4649422 ~ 4649636 (+) True G1702644
TU1948825 lncRNA downstream 44156 4651163 ~ 4651373 (+) True G1702645
XM_036956636.1 mRNA upstream 129970 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XR_005038458.1 mRNA upstream 143490 4459746 ~ 4461571 (+) True LOC118942831
XM_036956631.1 mRNA upstream 145310 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA upstream 145310 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956633.1 mRNA upstream 145310 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XR_005038439.1 mRNA downstream 244982 4851989 ~ 4852917 (+) True LOC118942787
XM_036956648.1 mRNA downstream 391219 4998226 ~ 5111935 (+) False LOC118936571
XM_036956649.1 mRNA downstream 464566 5071573 ~ 5111935 (+) True LOC118936571
XM_036956650.1 mRNA downstream 513113 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 566653 5173660 ~ 5179939 (+) False LOC118942832
TU1948666 other upstream 204080 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 209546 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 669024 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 669024 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 669024 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 445440 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 577467 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 647158 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 647158 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 978524 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile