RNA id: TU1948826


Basic Information

Item Value
RNA id TU1948826
length 407
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1702646
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4652215 ~ 4652621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatatacactggacTAGAGATAGAAGACTGGATGCTATAGAATGTgtagaatcactatatatatacactggacTAGAGATAGAAAGACTGAGCACATCATATGTGTCCAGTTTATATCTCCTCATCTCCTGTATGAGTTCAGACAGACTGCTATCAGTTTATCattcatctcctcatctcctgtaTGAGTTCAGACAGACAGCTATCAGTTTATCATTCATCTCCTGTATGAGTTCAGACAGACTACTCTCAGTTTATCATTCAACTCCTGTATGAGTTCAGACAGACAGCTATCAGTTTATCATTTAACTACTCGTCTCCTGTATGAGTTCAGACAGACAGCTATCAGTTTATCATTTAACTACTCGTCTCCTGTATGagttcagacagacagctctCGGTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948825 lncRNA upstream 842 4651163 ~ 4651373 (+) True G1702645
TU1948824 lncRNA upstream 2579 4649422 ~ 4649636 (+) True G1702644
TU1948823 lncRNA upstream 4666 4647044 ~ 4647549 (+) True G1702643
TU1948814 lncRNA upstream 24588 4626841 ~ 4627627 (+) True G1702636
TU1948809 lncRNA upstream 29017 4622863 ~ 4623198 (+) True G1702632
TU1948828 lncRNA downstream 5388 4658009 ~ 4658378 (+) True G1702648
TU1948856 lncRNA downstream 21349 4673970 ~ 4675027 (+) True G1702655
TU1948860 lncRNA downstream 37218 4689839 ~ 4690190 (+) True G1702659
TU1948861 lncRNA downstream 38975 4691596 ~ 4698714 (+) False G1702660
TU1948862 lncRNA downstream 38975 4691596 ~ 4698714 (+) True G1702660
XM_036956636.1 mRNA upstream 177124 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XR_005038458.1 mRNA upstream 190644 4459746 ~ 4461571 (+) True LOC118942831
XM_036956631.1 mRNA upstream 192464 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA upstream 192464 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956633.1 mRNA upstream 192464 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XR_005038439.1 mRNA downstream 199368 4851989 ~ 4852917 (+) True LOC118942787
XM_036956648.1 mRNA downstream 345605 4998226 ~ 5111935 (+) False LOC118936571
XM_036956649.1 mRNA downstream 418952 5071573 ~ 5111935 (+) True LOC118936571
XM_036956650.1 mRNA downstream 467499 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 521039 5173660 ~ 5179939 (+) False LOC118942832
TU1948666 other upstream 251234 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 256700 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 716178 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 716178 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 716178 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 399826 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 531853 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 601544 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 601544 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 932910 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile