RNA id: TU1948862


Basic Information

Item Value
RNA id TU1948862
length 4026
lncRNA type antisense_over
GC content 0.42
exon number 6
gene id G1702660
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4691596 ~ 4698714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGGCATCTCTTTTTATTGATACACAGGTTTAAATACAGACGTGATACATTCATTGGCCTCAGTGTGGGTTTTTTTTGTGGGTTTTTTTACAGACAGGGTTTTCATTGAAAAAAGAATGAAAAAACATCCATTGATATGCTGGCGTGATAAATCTACAGTTGAATGGCTGCATTCACTGTCACAGATTAGACCTTTCACTGAAAGTACAGACAATCTGGAGAAAACACACGTTTTCCTATGGCTTTACTTCAAATAAAGTAATATAGTCCTGTAGGAGAGCAACACTCCAGAGAACCATATGGAatatatacacagtacacaaGAACATGCAGTACTAGCAGTAATATAACATATAGTACTAGTAGTAACAGAAcatgtagtactagtagtaacagAACATGTAGTACTAGCAGTAACAGACCATGTAGTACTAGCAGTAATATAACATATAGTACTAGTAGTAACATAAcatgtagtactagtagtaacatAACatgtagtactagtagtaatataacatgtagtactagtagtaacagaacatgcagtactagtagtaacagaacatgtagtactagtagtaacagGACATTTAGTACTAGTAGTAATATAAcatgtagtactagtagtaatatAACATGTAGTACTAGCAGCAACAGTGGACACAAACATTCTCCCCAACTGAATATTGGTTCAAGTTCAAAATTCCAAGTCAGTCAAATTGTTTACAGTTATCCAAAGTAGAtgaagaaatagacaaacaacagGGGACGTGTCAGAACATGTCTAAGGGAATATGGCTACAAGCAACGACAGCTCACGAGGGTAAAACCAGTAAATGTGACATCAAGACGGTAAATGTAGTCACTGTAACGCAGGACTGTGTATATGTAGTCACGGTaacgcgtgtgtctgtgtgtgtgtgtgtgtgtgttgttcctgGCGGTCCGATTATTTCCTCAGTTCCTGCGGAGGCCCCTCCCCTGAATGTAGTCCTCCAGACCCTGTAGCTCTACCATGGCCTTGTCCAGAGTCGCCCTCTCGGACAGCTCAACCACCTGCACAACCAGAGATGGAACAGACGAGATGGTGTTAGCTGGAGGAACCTGTCTGTGCTTCTGCTTCGCTCtttgggtttaggctgggtaactataGAGACCGTTAGGCTGGGTAACTGTAGAGACCGTTAGGCTGGGTAACTATAGAGACCGTTAGGCTGGGTAACTATAGAGACCTTtaggtttaggctgggtaactatGGAGACCTTtaggtttaggctgggtaactacAGAGACCTTtaggtttaggctgggtaactatagagacctttgggtttaggctgggtaactatagagaccgttagttttaggctgggtaactatagagacctttgggtttaggctgggtaactataGAGACCTTTAGGTTTAGGCTTGGTAACTGTCGAGACCTTTGTGACAACAGTACTTCTGATGTAAAAAACAAAAGGGCCTTCTAAAATAAAAATGGATTGATTGAGGAACCTAGAAACAAGCTATTAAGGCCAGTCCATGACGCGTGCTTGCACAGTGTGTATCTGTAACACACAGTGAAGTTCTCTGTAACCCATCTCGAGTGTTATTGATGTGTGATCACTGGTGATTAAGAGGTAACGTGGAACCACACCTTTTTACTGGCTGCCTTCAGTCTCTGCAGCTGCAGTATGGCTGCATCCTTCGACAGCAGCTCCAAATCTTCCTCTATCTTAGACTGGGGAAATAAAACACAATacgtttaaatatatatatatatattaggttGTCGTTCATTACCTCATGCTGACGTGTCCCCGTGTGGTTGTTTAATTGCGGTTGAAGCTTGTTTTAACGTGCTTTTGTGTTTGATTGTCAGCGCCGTCCTGTGTTTACCTCATTCACTGGCTTCCCAGCAGCTTCCTGGTATAGCTTTTCACAGATCTTTAcctgcaatcaatcaatcagccaATCAAACAATCAGCCAATCAAACAATCAGCCAATCAAACAATCAGCCAATCAAACAATCgtatctatttaaaaaaaacaaaaaacatgtaCTTTGTCAGATGTTGTCATAAATTGCTTTGACAGATTTAGTGTGAGAGTCTTCTACACAGACACTAGCTGGGTTACAGAGCAGTGTAACATAATCCCTGAAACACAAAAAAAGGGCCACAGGAAATCCTGTCTGTGTTTGAGGCTCTACCGTCACAGAGAGACGGTTCACGCAATTCACATAGGAAGTGTCCCCaaaacaaatggcaccctatttcatatatggtgcactacttttaaccagagccctatggaccctagggtgccatttgggaggcagttATAATGTTTGAGACACTTACTGGGTGAATGCATTCCTTCACTTCATCCAGCAGGCCCCCGAGGTCAGGATAATTTCTGTCTTGTCTCTGGAGAACTTCCCGATAAAAGTCAATGATTTTGAGCAGGACACAGCCGTGGTACTGGacatgggagagaacaggagaatgGACATTGTGTTTAGTAAATGTGCTGCCGAGGTCGAGCACGATGGACATGGTGTCGATGGAACTTCTTCATTGCACTCATTCGTCTCAGACTCATGCAGGATCCCAGAGCACCAacagatcaatcaatcaaatgtattttttataaagcccttttcacaTCAGTCGATGTcacacaaagtgctttacagaaacccggTGTAAAACCCAGATGAGCAAGCTATGCAGAGGCAAAAGCACAGTGGCAAAAGTCCCTACAAGTCAggaacctagagaagaaccaggctttgaggggtggcctgtccccttctggctgtaccaggtagaaatgagaaacctaaagaggagccaggctctgaggggtggcctgtcctcttctggctgtaccaggtggagattataaacctagagagaggaaccaggctctgaggggtggcctgtcTTCTTCTGTGTCAGTCCTTACCTTCTTGTGCTTCTTGATCTTGTCAAAGGTGACTGTCTTTAACAGGATCCTGTCATCATGAGACGTGTTTGTCTAGTGAAGGAAACAACAGGTACAGTATGTCAATCCACTATACAGACTCATTCACACATGACCCATCAAAATAGAATCTATCTCTGTTTAGCCATTGGGAGTGTAATGACCCATCAAAATATGATCTATCTCTGGTTAGCCATTGAGAGTGCAATGACCCATCAAAATATGATCTATCTCTGGTTAGCCATTGAGAGTGCAATGACCCATCAAAAATAGAATATATCTCTGGTTAGCCATTGGGAGTGTAATGACCCATCAAAAATAGAATATATCTCTGGTAAACCATTGGGAGTGTAATGACCCATCAAAAATAGAATCTATCTCTGGTAAACCATTGGGAGTGTAATGACCCATCAAAAATAGAATCTATCTCTGGTAAACCATTGGGAAGGGTACCCATGATTTTACCACTCAAAAAGCAAAAGCATTgtgacataaacaacaacaacaacaataaacacataaacaaacgtacagtcaataacacaatagaaagatctgtgtacagtgtgtgtaaatgaagtaaggtaaggtaaggcaataaataggccaatagtggttaaataaattacaatttagcaattaacactggagtgatacagcATATGCGCAGTTAAGGATGTGTAAGTAggaatactggtgtgcaaaagagcagaaaaacaaaaaacacaatggggatgaggtaggtagttggttgtaagggctatttacagatcggtaagctgctctgacagctgacgtttaaagttagtgagggagatataagtctccaacttcagtgatttttccaattcgttccagtcattggaagcagagaactggaaggaaaggcggccaaaagaggtgttggctttggggatgaccagtgcaatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaagcataaagatataaaactgtatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948860 lncRNA upstream 1406 4689839 ~ 4690190 (+) True G1702659
TU1948856 lncRNA upstream 16569 4673970 ~ 4675027 (+) True G1702655
TU1948828 lncRNA upstream 33218 4658009 ~ 4658378 (+) True G1702648
TU1948826 lncRNA upstream 38975 4652215 ~ 4652621 (+) True G1702646
TU1948825 lncRNA upstream 40223 4651163 ~ 4651373 (+) True G1702645
TU1948868 lncRNA downstream 29288 4728002 ~ 4728236 (+) True G1702666
TU1948891 lncRNA downstream 89310 4788024 ~ 4794116 (+) True G1702681
TU1948914 lncRNA downstream 158449 4857163 ~ 4857886 (+) False G1702695
TU1948915 lncRNA downstream 158449 4857163 ~ 4857886 (+) False G1702695
TU1948916 lncRNA downstream 158449 4857163 ~ 4857886 (+) False G1702695
XM_036956636.1 mRNA upstream 216505 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XR_005038458.1 mRNA upstream 230025 4459746 ~ 4461571 (+) True LOC118942831
XM_036956631.1 mRNA upstream 231845 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA upstream 231845 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956633.1 mRNA upstream 231845 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XR_005038439.1 mRNA downstream 153275 4851989 ~ 4852917 (+) True LOC118942787
XM_036956648.1 mRNA downstream 299512 4998226 ~ 5111935 (+) False LOC118936571
XM_036956649.1 mRNA downstream 372859 5071573 ~ 5111935 (+) True LOC118936571
XM_036956650.1 mRNA downstream 421406 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 474946 5173660 ~ 5179939 (+) False LOC118942832
TU1948666 other upstream 290615 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 296081 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 755559 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 755559 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 755559 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 353733 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 485760 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 555451 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 555451 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 886817 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile