RNA id: TU1949409


Basic Information

Item Value
RNA id TU1949409
length 297
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G1703015
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4788103 ~ 4796262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctatatatcacaccgactcagcccaggtcacctcctatatatcacaccgactcagcccaggtcacctcctatatatcacaccaactcagcccaggtcacctcctatatatcacaccgactcagcccaggtcacctcctatatatcacaccaactcagcccaggttacctcctatatatatcacaccgactcagcccaggtcacctcctatatatcacaccaactcagcccaggtcacctcctatatatcacaccaactcagcccaggttacctcctatatatcgcACCAACTcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949396 lncRNA downstream 8385 4765943 ~ 4779718 (-) True G1703007
TU1949362 lncRNA downstream 115815 4668677 ~ 4672288 (-) False G1702991
TU1949364 lncRNA downstream 115815 4668677 ~ 4672288 (-) True G1702991
TU1949342 lncRNA downstream 127296 4660594 ~ 4660807 (-) True G1702988
TU1949315 lncRNA downstream 151484 4636347 ~ 4636619 (-) True LOC110499732
TU1949432 lncRNA upstream 60901 4857163 ~ 4857903 (-) False G1703038
TU1949434 lncRNA upstream 60901 4857163 ~ 4857903 (-) False G1703038
TU1949435 lncRNA upstream 60901 4857163 ~ 4857903 (-) True G1703038
TU1949517 lncRNA upstream 129375 4925637 ~ 4925920 (-) True G1703079
TU1949518 lncRNA upstream 132470 4928732 ~ 4929322 (-) True G1703080
NM_001124620.1 mRNA downstream 10022 4756753 ~ 4778081 (-) True ifng
XM_036958450.1 mRNA downstream 59372 4723028 ~ 4728731 (-) True LOC118942988
XM_036956640.1 mRNA downstream 83580 4692883 ~ 4704523 (-) False LOC110516460
XM_036956641.1 mRNA downstream 83580 4692883 ~ 4704523 (-) True LOC110516460
XM_036956638.1 mRNA downstream 151568 4611882 ~ 4636535 (-) False LOC110499732
XM_036956646.1 mRNA upstream 135954 4932216 ~ 4970118 (-) False LOC118936570
XM_036956645.1 mRNA upstream 135954 4932216 ~ 4970388 (-) False LOC118936570
XM_036956643.1 mRNA upstream 135954 4932216 ~ 4970389 (-) False LOC118936570
XR_005038460.1 mRNA upstream 135954 4932216 ~ 4970389 (-) False LOC118936570
XR_005038461.1 mRNA upstream 135954 4932216 ~ 4970389 (-) False LOC118936570
TU1949213 other downstream 343184 4442249 ~ 4444919 (-) False G1702914
TU1948253 other downstream 1199516 3585864 ~ 3588587 (-) False LOC110499739
TU1948272 other downstream 1199516 3585864 ~ 3588587 (-) False LOC110499739
TU1948280 other downstream 1199516 3585864 ~ 3588587 (-) False LOC110499739
TU1948153 other downstream 1269726 3281102 ~ 3518377 (-) True G1702141
TU1949475 other upstream 135952 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other upstream 135952 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other upstream 135952 4932214 ~ 4933989 (-) False LOC118936570
TU1949528 other upstream 150336 4946598 ~ 4947411 (-) True G1703085
TU1949495 other upstream 165720 4961982 ~ 4966019 (-) False LOC118936570

Expression Profile