RNA id: TU1948914


Basic Information

Item Value
RNA id TU1948914
length 535
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1702695
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4857163 ~ 4857886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctaGACATCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgatAGACATCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCTCTTAAACAGGTGTCCTACTCTGATAGACATCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtcttaaacaggtgttctactctgctagacaTCACCTCtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948891 lncRNA upstream 63047 4788024 ~ 4794116 (+) True G1702681
TU1948868 lncRNA upstream 128927 4728002 ~ 4728236 (+) True G1702666
TU1948861 lncRNA upstream 158449 4691596 ~ 4698714 (+) False G1702660
TU1948862 lncRNA upstream 158449 4691596 ~ 4698714 (+) True G1702660
TU1948860 lncRNA upstream 166973 4689839 ~ 4690190 (+) True G1702659
TU1948990 lncRNA downstream 78420 4936306 ~ 4936524 (+) True G1702744
TU1948993 lncRNA downstream 78720 4936606 ~ 4943766 (+) True G1702745
TU1949011 lncRNA downstream 113058 4970944 ~ 4971265 (+) True G1702761
TU1949012 lncRNA downstream 113514 4971400 ~ 4971885 (+) True G1702762
TU1949016 lncRNA downstream 118501 4976387 ~ 4976865 (+) False G1702765
XR_005038439.1 mRNA upstream 4246 4851989 ~ 4852917 (+) True LOC118942787
XM_036956636.1 mRNA upstream 382072 4451116 ~ 4475091 (+) False si:dkey-39a18.1
XR_005038458.1 mRNA upstream 395592 4459746 ~ 4461571 (+) True LOC118942831
XM_036956631.1 mRNA upstream 397412 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956632.1 mRNA upstream 397412 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956648.1 mRNA downstream 140340 4998226 ~ 5111935 (+) False LOC118936571
XM_036956649.1 mRNA downstream 213687 5071573 ~ 5111935 (+) True LOC118936571
XM_036956650.1 mRNA downstream 262234 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 315774 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA downstream 315774 5173660 ~ 5179939 (+) False LOC118942832
TU1948666 other upstream 456182 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 461648 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 921126 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 921126 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 921126 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 194561 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 326588 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 396279 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 396279 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 727645 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile