RNA id: TU1949499


Basic Information

Item Value
RNA id TU1949499
length 242
lncRNA type intronic
GC content 0.36
exon number 2
gene id G1703064
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4935103 ~ 4935716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACATTAGTCTGATAATGAAGGTAATGTAGCAGTAACAAGCTTCTTCACATTAGTCTGATAATGAAGGTAATGTAGCAGTAACAAGCTTCTTCACATTAGTctgataatgaagGTAATGTAGCAGTAACAAGCTTCTTCACATTAGTCTGATCATGAAGGTAATGTAGCAGTAACAAGCTTCTTCACATTAGTCTGATAATGAAGGTAATGTAGCAGTAACAAGCTTCTTCACATTGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949473 lncRNA downstream 1302 4932214 ~ 4933989 (-) False LOC118936570
TU1949480 lncRNA downstream 1302 4932214 ~ 4933989 (-) False LOC118936570
TU1949485 lncRNA downstream 1302 4932592 ~ 4933989 (-) False LOC118936570
TU1949518 lncRNA downstream 5969 4928732 ~ 4929322 (-) True G1703080
TU1949517 lncRNA downstream 9371 4925637 ~ 4925920 (-) True G1703079
TU1949504 lncRNA upstream 23194 4958910 ~ 4961893 (-) True G1703068
TU1949502 lncRNA upstream 23709 4959425 ~ 4960819 (-) True G1703066
TU1949501 lncRNA upstream 35658 4971374 ~ 4971580 (-) True G1703065
TU1949539 lncRNA upstream 40707 4976423 ~ 4977098 (-) True G1703094
TU1949545 lncRNA upstream 52170 4987886 ~ 4988497 (-) True G1703100
NM_001124620.1 mRNA downstream 157210 4756753 ~ 4778081 (-) True ifng
XM_036958450.1 mRNA downstream 206560 4723028 ~ 4728731 (-) True LOC118942988
XM_036956640.1 mRNA downstream 230768 4692883 ~ 4704523 (-) False LOC110516460
XM_036956641.1 mRNA downstream 230768 4692883 ~ 4704523 (-) True LOC110516460
XM_036956638.1 mRNA downstream 298756 4611882 ~ 4636535 (-) False LOC110499732
XM_036958452.1 mRNA upstream 116902 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 267098 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 267098 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 267098 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 267098 5202814 ~ 5223353 (-) False LOC110518655
TU1949475 other downstream 1302 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other downstream 1302 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other downstream 1302 4932214 ~ 4933989 (-) False LOC118936570
TU1949213 other downstream 490372 4442249 ~ 4444919 (-) False G1702914
TU1948280 other downstream 1346704 3585864 ~ 3588587 (-) False LOC110499739
TU1949528 other upstream 10882 4946598 ~ 4947411 (-) True G1703085
TU1949495 other upstream 26266 4961982 ~ 4966019 (-) False LOC118936570
TU1949491 other upstream 31864 4967580 ~ 4970355 (-) True LOC118936570
TU1949687 other upstream 265111 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 296919 5232635 ~ 5235225 (-) True G1703200

Expression Profile