RNA id: TU1948990


Basic Information

Item Value
RNA id TU1948990
length 219
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1702744
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4936306 ~ 4936524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTGAAGAAGATTGTTACTGCTACATTACCTTCATTATCAGGCTAATGTGAAGAAGCTTGTTACTGCTACATTACCTTCATTATCAGACTAGTGTGAAGAAGCTTGTTACTGCTACATTACCTTCATTATCAGACCAATGTGAAGAAGCTTGTTACTGCTACATTACCTTCATTATCAGACTAGTGTGAAGAAGCTTGTTACTGCTACATTACCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1948914 lncRNA upstream 78420 4857163 ~ 4857886 (+) False G1702695
TU1948915 lncRNA upstream 78420 4857163 ~ 4857886 (+) False G1702695
TU1948916 lncRNA upstream 78420 4857163 ~ 4857886 (+) False G1702695
TU1948919 lncRNA upstream 78420 4857163 ~ 4857886 (+) True G1702695
TU1948891 lncRNA upstream 142190 4788024 ~ 4794116 (+) True G1702681
TU1948993 lncRNA downstream 82 4936606 ~ 4943766 (+) True G1702745
TU1949011 lncRNA downstream 34420 4970944 ~ 4971265 (+) True G1702761
TU1949012 lncRNA downstream 34876 4971400 ~ 4971885 (+) True G1702762
TU1949016 lncRNA downstream 39863 4976387 ~ 4976865 (+) False G1702765
TU1949017 lncRNA downstream 39863 4976387 ~ 4976865 (+) True G1702765
XR_005038439.1 mRNA upstream 83389 4851989 ~ 4852917 (+) True LOC118942787
XR_005038458.1 mRNA upstream 474735 4459746 ~ 4461571 (+) True LOC118942831
XM_036956632.1 mRNA upstream 476555 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956648.1 mRNA downstream 61702 4998226 ~ 5111935 (+) False LOC118936571
XM_036956649.1 mRNA downstream 135049 5071573 ~ 5111935 (+) True LOC118936571
XM_036956650.1 mRNA downstream 183596 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 237136 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA downstream 237136 5173660 ~ 5179939 (+) False LOC118942832
TU1948666 other upstream 535325 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 540791 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 1000269 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 1000269 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 1000269 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 115923 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 247950 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 317641 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 317641 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 649007 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile