RNA id: TU1949502


Basic Information

Item Value
RNA id TU1949502
length 362
lncRNA type intronic
GC content 0.45
exon number 3
gene id G1703066
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4959425 ~ 4960819 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttattacagtgtctaccacagtaggagaggaggtcagtgtgttattacagtgtctaccacagtaggagaggaggtcagtgtagttattacagtgtctactacagtaggagaggaggtcagtgtgtTATTACCCTGTCTACCACAGTAGAGGAGGTCAGTGTGTTATTACAGTgtctaccacagtaggagaggaggtcagtgtagttattacagtgtctaccacagtaggagaggaggtcagtgtagttattacagtgtctaccacagtagaggaggtcagtgtagttattacagtgtctaccacagtagaggaggtcagtgtagttattacagtgtctaccacagtagaggaggtcagtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949500 lncRNA downstream 23709 4935103 ~ 4935716 (-) False G1703064
TU1949499 lncRNA downstream 23709 4935291 ~ 4935716 (-) True G1703064
TU1949473 lncRNA downstream 25436 4932214 ~ 4933989 (-) False LOC118936570
TU1949501 lncRNA upstream 10555 4971374 ~ 4971580 (-) True G1703065
TU1949539 lncRNA upstream 15604 4976423 ~ 4977098 (-) True G1703094
TU1949545 lncRNA upstream 27067 4987886 ~ 4988497 (-) True G1703100
TU1949592 lncRNA upstream 46700 5007519 ~ 5007839 (-) True G1703120
TU1949595 lncRNA upstream 49068 5009887 ~ 5010893 (-) True G1703123
NM_001124620.1 mRNA downstream 181344 4756753 ~ 4778081 (-) True ifng
XM_036958450.1 mRNA downstream 230694 4723028 ~ 4728731 (-) True LOC118942988
XM_036956640.1 mRNA downstream 254902 4692883 ~ 4704523 (-) False LOC110516460
XM_036956641.1 mRNA downstream 254902 4692883 ~ 4704523 (-) True LOC110516460
XM_036956638.1 mRNA downstream 322890 4611882 ~ 4636535 (-) False LOC110499732
XM_036958452.1 mRNA upstream 91799 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 241995 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 241995 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 241995 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 241995 5202814 ~ 5223353 (-) False LOC110518655
TU1949528 other downstream 12014 4946598 ~ 4947411 (-) True G1703085
TU1949475 other downstream 25436 4932214 ~ 4933989 (-) False LOC118936570
TU1949477 other downstream 25436 4932214 ~ 4933989 (-) False LOC118936570
TU1949488 other downstream 25436 4932214 ~ 4933989 (-) False LOC118936570
TU1949213 other downstream 514506 4442249 ~ 4444919 (-) False G1702914
TU1949495 other upstream 1163 4961982 ~ 4966019 (-) False LOC118936570
TU1949491 other upstream 6761 4967580 ~ 4970355 (-) True LOC118936570
TU1949687 other upstream 240008 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 271816 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 276589 5237408 ~ 5312973 (-) True LOC118942834

Expression Profile