RNA id: TU1949545


Basic Information

Item Value
RNA id TU1949545
length 564
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1703100
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4987886 ~ 4988497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTACTAGACATCATACTAGACATATCAAACATCCTACTAAATATCCTACCTAGACATCATACCAAACATCATACCAAACATCCTACTAGACATCATACCAAACATCCTACTAAACATCCTACCAAACATCCTACTAGACATCATACCAAACATCATACTAGACATCCTACCAGACATCCTACTAAGCATCCTACCAGACATCCTACTAAACATCATACTAGACATCATACCAAACATCCTACTAGACATCCTGCTAACATCCTACTAGACATCATACCAAACATCCTACTAGACATCCTACTAACATCCTACTAGACATCCTACCCCAAACATCCTACTAGACATCATACTAGACATCCTACTAGACATCCTACTAAACATCATACCAAACATCCTACTAAATATCCTACTAACATCCTACTAGACATCATACCAAACATCCTACTAGACATCCTACTAACATCCTACTAGACATCCTACTAGACATCCTACCCCAAACATCCTACTAGACATCCTACTAGACATCCTACTAGACATCCTACTAGACATCCTACTAGACATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949539 lncRNA downstream 10788 4976423 ~ 4977098 (-) True G1703094
TU1949501 lncRNA downstream 16306 4971374 ~ 4971580 (-) True G1703065
TU1949504 lncRNA downstream 25993 4958910 ~ 4961893 (-) True G1703068
TU1949502 lncRNA downstream 27067 4959425 ~ 4960819 (-) True G1703066
TU1949500 lncRNA downstream 52170 4935103 ~ 4935716 (-) False G1703064
TU1949592 lncRNA upstream 19022 5007519 ~ 5007839 (-) True G1703120
TU1949595 lncRNA upstream 21390 5009887 ~ 5010893 (-) True G1703123
TU1949596 lncRNA upstream 23237 5011734 ~ 5012590 (-) False G1703124
TU1949597 lncRNA upstream 23237 5011734 ~ 5012563 (-) True G1703124
TU1949600 lncRNA upstream 26267 5014764 ~ 5038708 (-) True G1703127
XM_036956647.1 mRNA downstream 17495 4932216 ~ 4970391 (-) False LOC118936570
XR_005038463.1 mRNA downstream 17497 4932216 ~ 4970389 (-) False LOC118936570
XM_036958452.1 mRNA upstream 64121 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 214317 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 214317 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 214317 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 214317 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 17531 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 21867 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 40475 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 53897 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 212330 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 244138 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 248911 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 431839 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 440971 5429468 ~ 5430172 (-) True G1703323

Expression Profile