RNA id: TU1949596


Basic Information

Item Value
RNA id TU1949596
length 563
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1703124
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5011734 ~ 5012590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTAAACCATCATCATGTTTTTAGGTGGTCACCATTTACCAGTCTAAACCATCATCATGTTTTTAGGTGATCACCATTTACCAGTCTAAACCACCACCAAATCCCACTTCCTAGTTACCAGGATTAGCAACCAACAGCGATGACTAGCGTGTAACTTAAGACCCCGGAGGTAAGAAATCTCCCAATTCAGAAGATGCTTGGTAACAATGGATAACTGTATTGTAATTGTAATAGTtgaagagcagagaactgtgttgtgatgtaacagttgaagagcagagaactgtgttgtgatgtaacagttgaagagcagagaactgtgttgtgatgtaacagttgaagagcagagaactgtgttgtgatgtaacagatgaagagcagagaactgtgttgtgatgtaacagttgaagagcagagaactgtgttgtgatgtaacagatgaagagcagagaactgtgttgtgatgtaacagttgaagagcagagaactgtgttgtgatgtaacagttgaagagcagagaactgtgttgtgatgtaacagttgaagagcagagaactgtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949595 lncRNA downstream 841 5009887 ~ 5010893 (-) True G1703123
TU1949592 lncRNA downstream 3895 5007519 ~ 5007839 (-) True G1703120
TU1949545 lncRNA downstream 23237 4987886 ~ 4988497 (-) True G1703100
TU1949539 lncRNA downstream 34636 4976423 ~ 4977098 (-) True G1703094
TU1949501 lncRNA downstream 40154 4971374 ~ 4971580 (-) True G1703065
TU1949600 lncRNA upstream 2174 5014764 ~ 5038708 (-) True G1703127
TU1949606 lncRNA upstream 12096 5024686 ~ 5025699 (-) True G1703133
TU1949614 lncRNA upstream 27597 5040187 ~ 5042179 (-) True G1703141
TU1949617 lncRNA upstream 35865 5048455 ~ 5049706 (-) True G1703143
TU1949618 lncRNA upstream 37269 5049859 ~ 5050239 (-) True G1703144
XM_036956647.1 mRNA downstream 41343 4932216 ~ 4970391 (-) False LOC118936570
XR_005038463.1 mRNA downstream 41345 4932216 ~ 4970389 (-) False LOC118936570
XM_036958452.1 mRNA upstream 40028 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 190224 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 190224 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 190224 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 190224 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 41379 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 45715 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 64323 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 77745 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 188237 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 220045 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 224818 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 407746 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 416878 5429468 ~ 5430172 (-) True G1703323

Expression Profile