RNA id: TU1949044


Basic Information

Item Value
RNA id TU1949044
length 476
lncRNA type intronic
GC content 0.49
exon number 3
gene id G1702784
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5013017 ~ 5013962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTACAGTCCCTACCCAATGGACCCTGCTCAAAGGGGAgtgcactaaacagggaatagggtgccattttcatGCAGGATTTCTGTTCAGAGATACGAGAGGGGTTCAAGTGGTGATGTTATCGTAGGACAGCGAGGCAGCGATTTGAAACCTCACCCCCCAACATGTCAATTCACAGGAAATTGGAACGGCAAAGTGCTTTGGTGCCTGAATTTTTATAAAGCATCTCGATaggagtgctggtctaggatACATTTTACGTATAGGTGGTCCCATGGATCAATCCCACTACCCTGGAGTTACCAGCACCATGCTGTACCAACTGATCAATCCCACTACCCTGGAGTTACCAGCACCATGCTGTACCAACTGATCAATCCCACTACCCTGGAGTTACCAGCACCATGCTATACCAACTGATCAATcccactaccctggcattacCAGCACCATGCTGTACCAACTGATCAATCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949016 lncRNA upstream 36152 4976387 ~ 4976865 (+) False G1702765
TU1949017 lncRNA upstream 36152 4976387 ~ 4976865 (+) True G1702765
TU1949012 lncRNA upstream 41132 4971400 ~ 4971885 (+) True G1702762
TU1949011 lncRNA upstream 41752 4970944 ~ 4971265 (+) True G1702761
TU1948993 lncRNA upstream 69251 4936606 ~ 4943766 (+) True G1702745
TU1949045 lncRNA downstream 1495 5015457 ~ 5016002 (+) True G1702785
TU1949049 lncRNA downstream 5768 5019730 ~ 5020339 (+) True G1702787
TU1949051 lncRNA downstream 26871 5040833 ~ 5041623 (+) True G1702789
TU1949055 lncRNA downstream 37048 5051010 ~ 5052163 (+) True G1702792
TU1949057 lncRNA downstream 39200 5053162 ~ 5055310 (+) True G1702794
XR_005038439.1 mRNA upstream 160100 4851989 ~ 4852917 (+) True LOC118942787
XR_005038458.1 mRNA upstream 551446 4459746 ~ 4461571 (+) True LOC118942831
XM_036956632.1 mRNA upstream 553266 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956649.1 mRNA downstream 57611 5071573 ~ 5111935 (+) True LOC118936571
XM_036956650.1 mRNA downstream 106158 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 159698 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA downstream 159698 5173660 ~ 5179939 (+) False LOC118942832
XR_005038469.1 mRNA downstream 159698 5173660 ~ 5179939 (+) True LOC118942832
TU1948666 other upstream 612036 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 617502 4394993 ~ 4395515 (+) True G1702554
TU1947490 other upstream 1076980 3932787 ~ 3936037 (+) False G1701654
TU1947491 other upstream 1076980 3932787 ~ 3936037 (+) False G1701654
TU1947496 other upstream 1076980 3933930 ~ 3936037 (+) False G1701654
TU1949056 other downstream 38485 5052447 ~ 5054464 (+) True G1702793
TU1948974 other downstream 170512 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 240203 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 240203 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 571569 5585531 ~ 5596428 (+) True LOC110511233

Expression Profile