RNA id: TU1949600


Basic Information

Item Value
RNA id TU1949600
length 431
lncRNA type intronic
GC content 0.50
exon number 4
gene id G1703127
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5014764 ~ 5038708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctaggtcatgagggatgagtcatctgggtcaggaggggtcaggtgatgcccctaggtcatgagggatgagtgatctgggtcaggaggggtcaggtgatgccccctaggccatgagggatgagtgatctgggaaaggaggggaggagatggatggGGCTGAATTAAGACAGGAGGAGTTTTCTACAATCTCTTTCTAGTCTTCAggataaacatatatatttttctagGAGTTAGTTTATGAGCTAGAAGTACAAAGGGCTTGAGTGAATTAGCTGCTTCATAAAACCATAGGACTGCTGAGACAAATGTGCTGCTTCATAAAACCATAGGACTGCTGAGACAAATGTATCACCTACCTACACGCTTCCCCGCCTACACGCCTCCCCGCCTACACGCCTCCCCATCTACACGCCTCCCCAGTCTACACGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949596 lncRNA downstream 2174 5011734 ~ 5012590 (-) False G1703124
TU1949597 lncRNA downstream 2201 5011734 ~ 5012563 (-) True G1703124
TU1949595 lncRNA downstream 3871 5009887 ~ 5010893 (-) True G1703123
TU1949592 lncRNA downstream 6925 5007519 ~ 5007839 (-) True G1703120
TU1949545 lncRNA downstream 26267 4987886 ~ 4988497 (-) True G1703100
TU1949614 lncRNA upstream 1479 5040187 ~ 5042179 (-) True G1703141
TU1949617 lncRNA upstream 9747 5048455 ~ 5049706 (-) True G1703143
TU1949618 lncRNA upstream 11151 5049859 ~ 5050239 (-) True G1703144
TU1949619 lncRNA upstream 13376 5052084 ~ 5070681 (-) True G1703145
TU1949621 lncRNA upstream 16614 5055322 ~ 5055821 (-) True G1703147
XM_036956647.1 mRNA downstream 44373 4932216 ~ 4970391 (-) False LOC118936570
XR_005038463.1 mRNA downstream 44375 4932216 ~ 4970389 (-) False LOC118936570
XM_036958452.1 mRNA upstream 13910 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 164106 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 164106 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 164106 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 164106 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 44409 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 48745 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 67353 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 80775 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 162119 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 193927 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 198700 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 381628 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 390760 5429468 ~ 5430172 (-) True G1703323

Expression Profile