RNA id: TU1949606


Basic Information

Item Value
RNA id TU1949606
length 410
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1703133
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5024686 ~ 5025699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGTTCTCTAGACTACAGCAGAAGGTGTGTTGGTAGCTGGTAGCTACATATAGACACTGTGTTCACCAGGTTCTCTAGACGACAGCAGAAGGTGTGTTGGTAGCTGGTGGCTGGTAGAGTAGCTGTCTGGTGTGATCcgctcttctcttcttctctgtgaCATTTAGGAGGTTCATTTAACTACACTAACAAGGTAACCGCTGCCTCTCAGCCCCACTAACAACCCTCTCTATCAGCCCCACTAACAACCCTCTCTATCAGCCCCACTAACAACCCTCTCTATCAGCCCCACTAACAACCCTCTCTATCAGCCCCACTAACAACCCTCTCTATCAGCCCCACTAACAACCCTCTCTATCAGCCCCACTAACAACCCTCTATATCAGCCCCATTAGCAAGCTAGTGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949596 lncRNA downstream 12096 5011734 ~ 5012590 (-) False G1703124
TU1949597 lncRNA downstream 12123 5011734 ~ 5012563 (-) True G1703124
TU1949595 lncRNA downstream 13793 5009887 ~ 5010893 (-) True G1703123
TU1949592 lncRNA downstream 16847 5007519 ~ 5007839 (-) True G1703120
TU1949545 lncRNA downstream 36189 4987886 ~ 4988497 (-) True G1703100
TU1949614 lncRNA upstream 14488 5040187 ~ 5042179 (-) True G1703141
TU1949617 lncRNA upstream 22756 5048455 ~ 5049706 (-) True G1703143
TU1949618 lncRNA upstream 24160 5049859 ~ 5050239 (-) True G1703144
TU1949619 lncRNA upstream 26385 5052084 ~ 5070681 (-) True G1703145
TU1949621 lncRNA upstream 29623 5055322 ~ 5055821 (-) True G1703147
XM_036956647.1 mRNA downstream 54295 4932216 ~ 4970391 (-) False LOC118936570
XR_005038463.1 mRNA downstream 54297 4932216 ~ 4970389 (-) False LOC118936570
XM_036958452.1 mRNA upstream 26919 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 177115 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 177115 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 177115 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 177115 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 54331 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 58667 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 77275 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 90697 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 175128 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 206936 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 211709 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 394637 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 403769 5429468 ~ 5430172 (-) True G1703323

Expression Profile