RNA id: TU1949614


Basic Information

Item Value
RNA id TU1949614
length 493
lncRNA type intronic
GC content 0.57
exon number 3
gene id G1703141
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5040187 ~ 5042179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaggttggcgtaatggagtcaggttggtGTAATAGAGTCAGGTTGATGTAATAGATTCAGGTTGatgtaatggagtcaggttggtgtaatggagtcaggttggcgtaatggagtcaggttgatGTAAAGTCCCCCCAGTCAACAGCCCTGAGTCCACCCTGTCAACAGCTCTGAGTCCACCCTGTCAACAGCCCCGAGTCCACCCTGTCAACAGCCCCGAGTCCACCCTGTCAACAGCCCCGAGTCCACCCTGTCAACAGCCCCGAGTCCACCCTGTCAACAGCCCCGAGTCCACCCTGTCAACAGCCCTGAGTCCACCCTGTCAACAGCCCTGAGTCCACCCTGTCAACAGCCCTGAGTCCACCCTGTCAACAGCCCTGAGTCCACCCTGTCAACAGCCCTGAGTCCACCCTGTCAACAGCCCTGAGTCCACCCTGTCAACAGCTCTGAGTCCACCCTGTCAACAGCCCCGAGTCCACCCTGTCAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949600 lncRNA downstream 1479 5014764 ~ 5038708 (-) True G1703127
TU1949606 lncRNA downstream 14488 5024686 ~ 5025699 (-) True G1703133
TU1949596 lncRNA downstream 27597 5011734 ~ 5012590 (-) False G1703124
TU1949597 lncRNA downstream 27624 5011734 ~ 5012563 (-) True G1703124
TU1949595 lncRNA downstream 29294 5009887 ~ 5010893 (-) True G1703123
TU1949617 lncRNA upstream 6276 5048455 ~ 5049706 (-) True G1703143
TU1949618 lncRNA upstream 7680 5049859 ~ 5050239 (-) True G1703144
TU1949619 lncRNA upstream 9905 5052084 ~ 5070681 (-) True G1703145
TU1949621 lncRNA upstream 13143 5055322 ~ 5055821 (-) True G1703147
TU1949622 lncRNA upstream 14034 5056213 ~ 5056822 (-) True G1703148
XM_036956647.1 mRNA downstream 69796 4932216 ~ 4970391 (-) False LOC118936570
XR_005038463.1 mRNA downstream 69798 4932216 ~ 4970389 (-) False LOC118936570
XM_036958452.1 mRNA upstream 10439 5052618 ~ 5060318 (-) True LOC118942989
XM_036956662.1 mRNA upstream 160635 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 160635 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 160635 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 160635 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 69832 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 74168 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 92776 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 106198 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 158648 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 190456 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 195229 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 378157 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 387289 5429468 ~ 5430172 (-) True G1703323

Expression Profile