RNA id: TU1949621


Basic Information

Item Value
RNA id TU1949621
length 298
lncRNA type read_through
GC content 0.48
exon number 2
gene id G1703147
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5055322 ~ 5055821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTTGGTTAAATCTGAGTGATTGAGGTGAATCTCCATTCTATCGACTAGCAGCTGTCCTCACTTCACTTCtgggtgtgtgtttattgtggaggtctatcactgtgttgtggaggtctaccactgtgttgtggaggtcttccactgtgttgtggaggtctagcactgtgttgtggaggtctaccactgtgttgtggaggtctaccactgtgttgtggaggtctaccactgtgttgtggaggtataccactgtgttgtggaggtataccactgtgttgtggaggtctaccagtgTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949618 lncRNA downstream 5083 5049859 ~ 5050239 (-) True G1703144
TU1949617 lncRNA downstream 5616 5048455 ~ 5049706 (-) True G1703143
TU1949614 lncRNA downstream 13143 5040187 ~ 5042179 (-) True G1703141
TU1949600 lncRNA downstream 16614 5014764 ~ 5038708 (-) True G1703127
TU1949622 lncRNA upstream 392 5056213 ~ 5056822 (-) True G1703148
TU1949560 lncRNA upstream 32284 5088105 ~ 5113038 (-) False G1703109
TU1949561 lncRNA upstream 32284 5088105 ~ 5113038 (-) False G1703109
TU1949563 lncRNA upstream 32284 5088105 ~ 5113038 (-) False G1703109
TU1949564 lncRNA upstream 32284 5088105 ~ 5113038 (-) False G1703109
XM_036956647.1 mRNA downstream 84931 4932216 ~ 4970391 (-) False LOC118936570
XR_005038463.1 mRNA downstream 84933 4932216 ~ 4970389 (-) False LOC118936570
XM_036956662.1 mRNA upstream 146993 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 146993 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 146993 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 146993 5202814 ~ 5223353 (-) False LOC110518655
XM_036956665.1 mRNA upstream 146993 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 84967 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 89303 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 107911 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 121333 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 145006 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 176814 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 181587 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 364515 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 373647 5429468 ~ 5430172 (-) True G1703323

Expression Profile