RNA id: TU1949564


Basic Information

Item Value
RNA id TU1949564
length 1521
lncRNA type antisense_over
GC content 0.39
exon number 4
gene id G1703109
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5088105 ~ 5113038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaaaagaaaatctatACTTCCTGTTGTAGATCGCAGATTCCATGAGAGGGGATTGGCTAACTGGACAAACCAACCAATGAGAGACGGCCTTGGAAggataaagtttaaaaaaaaacaaaaaaacatgatgAGGATCGCCCAGTCACGTCGGCCATTGGTGTCTCAGAAGTTTGGTCGCTTGTTAAAATGTCCAGTCCCTCTTTGACCACAACCCCAATTGAAAAACCCCACTGTACAAACATCTTTGTAAACAACACAAGGGCTGCCTCCAAAATTGCATCTTAATtccttatatagtgtactacttttgaccagggcccatagggaaaccAATAGGGAAAACCAATAGGGAAACCAATAGGGAAAACCAATAGGGAAAACCAATAGGGAAAACCAATAGGGAAACCCATAGGGAAAACCAATAGGGAAACCAATAGAGACAACCAATAGGGACACCCATAGGGAAACCAATAGGGAaaccattgggctctggtcaaatataATACACttgggtgccatttcagacggaAGAAAACCCAGGCAAGACATAGAAGGATGATTGGATCATAGTTGGATTCtccagaaaagaaaaaaaaaccctATTTGAAGGCAACATCATCAGGCTAAAAGACAATATGATAGTTACTGAAAAAAAcattatacttttttttctctttttacaCACATAATCATCACTGTTGTATCCACAGGTTTACTCCTCAAATGAAACTCACATATAATAAGAATAATAAGAATAATAATCACTGTCGTAGCCACAGGTTTACTCCTCAAATAAAACTCACATCAATAGCTGTCGCAGTATAGCATCTCTCAGTAGAGACAAAactagtcatttaaaaaaataaaataaaaagacagaaaaagacagagaaaTGATGTTGAATGATCgaaggaaaataaaaataaaaagttagaAAATAAACCCCCAGGAGCAAGTTATCTGTATGAACTGAACTATATAGGTGCCTCTTTGGGGGactttgtctttttctctctggCTAATATAGAGGTGCTTATAAATACCGCATCACCGTGGCAACGTGCACATTCTGGTTAGACATTCCGTTTCTACGGCTACTGTCTCCGTTAGCAATAACACTGTGTGTAAGGGGATCGGGATTTTTATTTCGGTTCATATTGACTGATTTACCTATTTCGTTTTACTTTATTATTTTATGAACTTAATTTTTCCATTTCAGTTGGAATATCTATATTGCTAAGTAGAAATCTTAGTTCTCGTGACACTGGAGAGTGATAATGGTTAATCTGTGTGTAAAAACTCTGATGTATTTGTAGCGTTGAATCCGTTGGTCGGTTTGTTTGTTGGTTGTTGGGTGTTAAAGGGGGCGTCACCACACAGGAAAGTCCATTCCATGTTAGGTTTTAGTCACGTCGGAATGCTGGCACTGCTGAGAGAGACAGCAGCAAATCAGacctgaaagggagagagagagagagagagagagagagagagagagagagagagagaaagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949619 lncRNA downstream 17424 5052084 ~ 5070681 (-) True G1703145
TU1949622 lncRNA downstream 31283 5056213 ~ 5056822 (-) True G1703148
TU1949621 lncRNA downstream 32284 5055322 ~ 5055821 (-) True G1703147
TU1949618 lncRNA downstream 37866 5049859 ~ 5050239 (-) True G1703144
TU1949617 lncRNA downstream 38399 5048455 ~ 5049706 (-) True G1703143
TU1949554 lncRNA upstream 101 5113139 ~ 5114445 (-) False G1703108
TU1949556 lncRNA upstream 101 5113139 ~ 5114445 (-) True G1703108
TU1949644 lncRNA upstream 4713 5117751 ~ 5118194 (-) True G1703167
TU1949646 lncRNA upstream 7838 5120876 ~ 5121209 (-) True G1703169
TU1949648 lncRNA upstream 10021 5123059 ~ 5123610 (-) True G1703171
XM_036958452.1 mRNA downstream 27787 5052618 ~ 5060318 (-) True LOC118942989
XM_036956647.1 mRNA downstream 117714 4932216 ~ 4970391 (-) False LOC118936570
XR_005038465.1 mRNA downstream 117716 4932216 ~ 4970389 (-) False LOC118936570
XM_036956662.1 mRNA upstream 89776 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 89776 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 89776 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 89776 5202814 ~ 5223353 (-) False LOC110518655
XM_036956665.1 mRNA upstream 89776 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 117750 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 122086 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 140694 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 154116 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 87789 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 119597 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 124370 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 307298 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 316430 5429468 ~ 5430172 (-) True G1703323

Expression Profile