RNA id: TU1949559


Basic Information

Item Value
RNA id TU1949559
length 1499
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G1703109
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5088105 ~ 5113038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaaaagaaaatctatACTTCCTGTTGTAGATCGCAGATTCCATGAGAGGGGATTGGCTAACTGGACAAACCAACCAATGAGAGACGGCCTTGGAAggataaagtttaaaaaaaaacaaaaaaacatgatgAGGATCGCCCAGTCACGTCGGCCATTGGTGTCTCAGAAGTTTGGTCGCTTGTTAAAATGTCCAGTCCCTCTTTGACCACAACCCCAATTGAAAAACCCCACTGTACAAACATCTTTGTAAACAACACAAGGGCTGCCTCCAAAATTGCATCTTAATtccttatatagtgtactacttttgaccagggcccatagggaaaccAATAGGGAAAACCAATAGGGAAACCAATAGGGAAAACCAATAGGGAAAACCAATAGGGAAAACCAATAGGGAAACCCATAGGGAAACCAATAGGGAaaccattgggctctggtcaaatataATACACttgggtgccatttcagacggaAGAAAACCCAGGCAAGACATAGAAGGATGATTGGATCATAGTTAGATTCTCCAGAAAAGAAAGATGATTGGATCATAGTTGGATTCtccagaaaagaaaaaaaaaccctATTTGAAGGCAACATCATCAGGCTAAAAGACAATATGATAGTTACTGAAAAAAAcattatacttttttttctctttttacaCACATAATCATCACTGTTGTATCCACAGGTTTACTCCTCAAATGAAACTCACATATAATAAGAATAATAAGAATAATAATCACTGTCGTAGCCACAGGTTTACTCCTCAAATAAAACTCACATCAATAGCTGTCGCAGTATAGCATCTCTCAGTAGAGACAAAactagtcatttaaaaaaataaaataaaaagacagaaaaagacagagaaaTGATGTTGAATGATCgaaggaaaataaaaataaaaagttagaAAATAAACCCCCAGGAGCAAGTTATCTGTATGAACTGAACTATATAGGTGCCTCTTTGGGGGactttgtctttttctctctggCTAATATAGAGGTGCTTATAAATACCGCATCACCGTGGCAACGTGCACATTCTGGTTAGACATTCCGTTTCTACGGCTACTGTCTCCGTTAGCAATAACACTGTGTGTAAGGGGATCGGGATTTTTATTTCGGTTCATATTGACTGATTTACCTATTTCGTTTTACTTTATTATTTTATGAACTTAATTTTTCCATTTCAGTTGGAATATCTATATTGCTAAGTAGAAATCTTAGTTCTCGTGACACTGGAGAGTGATAATGGTTAATCTGTGTGTAAAAACTCTGATGTATTTGTAGCGTTGAATCCGTTGGTCGGTTTGTTTGTTGGTTGTTGGGTGTTAAAGGGGGCGTCACCACACAGGAAAGTCCATTCCATGTTAGGTTTTAGTCACGTCGGAATGCTGGCACTGCTGAGAGAGACAGCAGCAAATCAGacctgaaagggagagagagagagagagagagaggtgggtagagagagagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949642 lncRNA downstream 3150 5107220 ~ 5107517 (-) True G1703165
TU1949639 lncRNA downstream 13930 5095773 ~ 5096737 (-) True G1703162
TU1949619 lncRNA downstream 39986 5052084 ~ 5070681 (-) True G1703145
TU1949622 lncRNA downstream 53845 5056213 ~ 5056822 (-) True G1703148
TU1949621 lncRNA downstream 54846 5055322 ~ 5055821 (-) True G1703147
TU1949554 lncRNA upstream 101 5113139 ~ 5114445 (-) False G1703108
TU1949556 lncRNA upstream 101 5113139 ~ 5114445 (-) True G1703108
TU1949644 lncRNA upstream 4713 5117751 ~ 5118194 (-) True G1703167
TU1949646 lncRNA upstream 7838 5120876 ~ 5121209 (-) True G1703169
TU1949648 lncRNA upstream 10021 5123059 ~ 5123610 (-) True G1703171
XM_036958452.1 mRNA downstream 50349 5052618 ~ 5060318 (-) True LOC118942989
XM_036956647.1 mRNA downstream 140276 4932216 ~ 4970391 (-) False LOC118936570
XR_005038465.1 mRNA downstream 140278 4932216 ~ 4970389 (-) False LOC118936570
XM_036956662.1 mRNA upstream 89776 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 89776 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 89776 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 89776 5202814 ~ 5223353 (-) False LOC110518655
XM_036956665.1 mRNA upstream 89776 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 140312 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 144648 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 163256 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 176678 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 87789 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 119597 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 124370 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 307298 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 316430 5429468 ~ 5430172 (-) True G1703323

Expression Profile