RNA id: TU1949072


Basic Information

Item Value
RNA id TU1949072
length 249
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1702805
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5091058 ~ 5091542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgagacaggactgttgtagaggtactgagacaggactgttgtagaggtactgagacagacaggactgttgtagaggtactgagacaggactgttgtagaggtactgagacagacaggactgttgtagaggtactgagacagacaggactgttgtagaggtactgagacagacaggactgttgtagaggtactgagacagacaggactgttgtagaggtactgagacagacaggactgttacgGAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949063 lncRNA upstream 27662 5061603 ~ 5063396 (+) True G1702797
TU1949058 lncRNA upstream 35308 5053565 ~ 5055750 (+) True G1702795
TU1949057 lncRNA upstream 35748 5053162 ~ 5055310 (+) True G1702794
TU1949055 lncRNA upstream 38895 5051010 ~ 5052163 (+) True G1702792
TU1949051 lncRNA upstream 49435 5040833 ~ 5041623 (+) True G1702789
TU1949074 lncRNA downstream 3432 5094974 ~ 5095659 (+) True G1702807
TU1949078 lncRNA downstream 26594 5118136 ~ 5118564 (+) True G1702811
TU1949080 lncRNA downstream 28102 5119644 ~ 5119857 (+) True G1702813
TU1948981 lncRNA downstream 52102 5143644 ~ 5167820 (+) True G1702735
TU1948986 lncRNA downstream 64324 5155866 ~ 5170170 (+) True G1702740
XR_005038439.1 mRNA upstream 238141 4851989 ~ 4852917 (+) True LOC118942787
XR_005038458.1 mRNA upstream 629487 4459746 ~ 4461571 (+) True LOC118942831
XM_036956632.1 mRNA upstream 631307 4451119 ~ 4459751 (+) False si:dkey-39a18.1
XM_036956650.1 mRNA downstream 28578 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 82118 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA downstream 82118 5173660 ~ 5179939 (+) False LOC118942832
XR_005038469.1 mRNA downstream 82118 5173660 ~ 5179939 (+) True LOC118942832
XR_005038470.1 mRNA downstream 83953 5175495 ~ 5176684 (+) True LOC118942833
TU1949056 other upstream 36594 5052447 ~ 5054464 (+) True G1702793
TU1948666 other upstream 690077 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 695543 4394993 ~ 4395515 (+) True G1702554
TU1947491 other upstream 1155021 3932787 ~ 3936037 (+) False G1701654
TU1948974 other downstream 92932 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 162623 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 162623 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 493989 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 625657 5717199 ~ 5717701 (+) True G1703391

Expression Profile