RNA id: TU1949080


Basic Information

Item Value
RNA id TU1949080
length 214
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1702813
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5119644 ~ 5119857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTGTATTatctgatccctcctgatgactcTGATTGAATCATGTCCCAaccgggtcatcaggagggatcagacAATCGAGAATaagaaaatggactacttcaagtagaaattgcctcaatggcgctgcccggTGTGCTCACAGACGatataatggcacagatataaAAACATGAATTCTCTATCTTATCTCTATGGCAGCAGCTGTTTACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949078 lncRNA upstream 1080 5118136 ~ 5118564 (+) True G1702811
TU1949074 lncRNA upstream 23985 5094974 ~ 5095659 (+) True G1702807
TU1949072 lncRNA upstream 28102 5091058 ~ 5091542 (+) True G1702805
TU1949063 lncRNA upstream 56248 5061603 ~ 5063396 (+) True G1702797
TU1949058 lncRNA upstream 63894 5053565 ~ 5055750 (+) True G1702795
TU1948981 lncRNA downstream 23787 5143644 ~ 5167820 (+) True G1702735
TU1948986 lncRNA downstream 36009 5155866 ~ 5170170 (+) True G1702740
TU1949090 lncRNA downstream 51657 5171514 ~ 5171819 (+) False G1702821
TU1949091 lncRNA downstream 51657 5171514 ~ 5172117 (+) True G1702821
TU1949095 lncRNA downstream 82216 5202073 ~ 5202278 (+) True G1702825
XM_036956648.1 mRNA upstream 7709 4998226 ~ 5111935 (+) False LOC118936571
XM_036956649.1 mRNA upstream 7709 5071573 ~ 5111935 (+) True LOC118936571
XR_005038439.1 mRNA upstream 266727 4851989 ~ 4852917 (+) True LOC118942787
XR_005038458.1 mRNA upstream 658073 4459746 ~ 4461571 (+) True LOC118942831
XM_036956634.1 mRNA upstream 659893 4451119 ~ 4459751 (+) True si:dkey-39a18.1
XM_036956650.1 mRNA downstream 263 5120120 ~ 5173429 (+) True LOC110490690
XM_036956651.1 mRNA downstream 53803 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA downstream 53803 5173660 ~ 5179939 (+) False LOC118942832
XR_005038469.1 mRNA downstream 53803 5173660 ~ 5179939 (+) True LOC118942832
XR_005038470.1 mRNA downstream 55638 5175495 ~ 5176684 (+) True LOC118942833
TU1949056 other upstream 65180 5052447 ~ 5054464 (+) True G1702793
TU1948666 other upstream 718663 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 724129 4394993 ~ 4395515 (+) True G1702554
TU1947491 other upstream 1183607 3932787 ~ 3936037 (+) False G1701654
TU1948974 other downstream 64617 5184474 ~ 5188847 (+) True LOC110516940
TU1949137 other downstream 134308 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 134308 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 465674 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 597342 5717199 ~ 5717701 (+) True G1703391

Expression Profile