RNA id: TCONS_00004827


Basic Information

Item Value
RNA id TCONS_00004827
length 933
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_002593
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8045364 ~ 8046764 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGCTGCTGTTGATGTTATCACTTTGACTGTTGAATCCTGCTcaaacaagacaagacaagGTccaaacaaaaatgtattgtgGAGCAATGAAGGTTTATCAAAGTGTTCTGCTGTTCTTGAGTTGCCAAATCCTTTACACTCGGGCTTTAGACTGTACTATAATGAGTGGTAACCTGAAGCAGATTGACGCTGGGTCTGGTTCAGTGGTTGGAGTGAACGATCTAAATCAAGCGTTTGTGCTGCAAGATGATGTCTTCAATCCGGTCAGCAGATCTCTAAAGCACTTCAGTGTTGGTCCTGCTGGTCAGCTGGGAGTGAATGGAACCTACTACATCTTCAAATTGATAAGTGGCAGATTTGTTCAGTTTCCAGgtcTTTTGAAGCAGGTGGATGCTGGAGGTGATCAGATTATTGCAGGCGTCAATATGAATGATGACATCTTTTGTTTGAACATGGATGCTAACAACCAATGGCCATCCAGCACCACTCCTTGGGTTACCCTTAATGGAAAGCTGAAGTATTACAGCTGTGGCCCTTACAGCTGCTGGGGTGTGAACTCTGCTGACCGTATCTTTATCATGAAGGGTGTGTCCAGTAATGCCTGTTCTGGGGATGGGACTTTTGTAAATATTCCTGGACTTCTGTCCATGATTGAAGTGGGAACAGATGGCAGTGTCTTTGGTGTCAACTATGAAGCAAAACTATTCCAAAGAGTTGGTGTGAGTCGGTCTAACCCTGCTGGCACAGACTGGATCTCAATGATTGCCTGTCCCATTGGTCACAAACACGTTTCCTTTGACCTGGGAGTGCTGTGGGTTGTCTGTGTTGATGGCTCCATCCGTAAATGTACTCTATAATCTTAATCACTAGAaaccactaaaaaaaaaaaccctaaagaAATCATTAACAGACAAATAAAAGCTTAATCTTA

Function

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-3062 No description available

Ensembl:

ensembl_id ENSDART00000099031

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005749 lncRNA downstream 61620 7981119 ~ 7983744 (-) True XLOC_002590
TCONS_00004822 lncRNA downstream 65369 7976969 ~ 7979995 (-) False XLOC_002589
TCONS_00004821 lncRNA downstream 65640 7976348 ~ 7979724 (-) False XLOC_002589
TCONS_00005747 lncRNA downstream 159324 7883753 ~ 7886040 (-) False XLOC_002586
TCONS_00004840 lncRNA upstream 219507 8266271 ~ 8269833 (-) False XLOC_002599
TCONS_00005997 lncRNA upstream 571954 8618718 ~ 8621543 (-) False XLOC_002602
TCONS_00004846 lncRNA upstream 572085 8618849 ~ 8621273 (-) True XLOC_002602
TCONS_00005998 lncRNA upstream 592157 8638921 ~ 8657677 (-) True XLOC_002603
TCONS_00005999 lncRNA upstream 794934 8841698 ~ 8858549 (-) False XLOC_002606
TCONS_00004826 mRNA downstream 3416 8034688 ~ 8041948 (-) True XLOC_002592
TCONS_00004824 mRNA downstream 11896 7988746 ~ 8033468 (-) False XLOC_002591
TCONS_00004825 mRNA downstream 12479 7989505 ~ 8032885 (-) True XLOC_002591
TCONS_00004820 mRNA downstream 56947 7975585 ~ 7988417 (-) False XLOC_002589
TCONS_00004823 mRNA downstream 56968 7979080 ~ 7988396 (-) True XLOC_002589
TCONS_00004829 mRNA upstream 4852 8051616 ~ 8053753 (-) False XLOC_002594
TCONS_00004830 mRNA upstream 5238 8052002 ~ 8053385 (-) True XLOC_002594
TCONS_00004831 mRNA upstream 12086 8058850 ~ 8079830 (-) False XLOC_002595
TCONS_00004832 mRNA upstream 12437 8059201 ~ 8060576 (-) False XLOC_002595
TCONS_00004833 mRNA upstream 12439 8059203 ~ 8060573 (-) False XLOC_002595
TCONS_00004819 other downstream 85526 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004811 other downstream 152680 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other downstream 153498 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004790 other downstream 533241 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 693254 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004848 other upstream 629126 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 969957 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 990594 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 1094801 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004869 other upstream 1488018 9534782 ~ 9538326 (-) False XLOC_002618

Expression Profile

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