RNA id: TU1949661


Basic Information

Item Value
RNA id TU1949661
length 602
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1703184
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5179227 ~ 5179912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGTATGAAAAAAAATAAGAATCATTCAATAATGCAAAAGTATCTTCAGCATTTGGACATTGTTAAGAGCAAGTTGTCCTCTCTTTAATCGTACCGGCAAAAATACTGGAATATAAGACAGCATCTTGAGTAATGCAAAAACTATGTTAATACTAGGCTTGCTGAGCTCCCACATCTTCCAATACAATATACATTCCACTTCTTTAACAGTGTATTATCATCGTCATCATTAGTGTTCCCTGCCAGAACTATCTCCCTTTATCTCACTGTTTGGCCAGTTCCCCTTTCACTCAACAATCACATTCCAACTATAGAATTCTAGTTCTATGATTCCAACCTCTAGTTCTATGATTCCAACCTCTAGTTCTATGATTCCAACATGGCCCTTCCCTCAAACAGTCCTAGGGAACCAGTGAGTTGTCAAGCAACCAATGAGAGTAGCAGCCTCTATGGATTGGCACTCCGGTGGGCCTATCATGGCCTCTGGACCAGCTTGCTTTTGCCCTCCTCCTGCTCTGCCAGCTTGAAGTGGGTGTAGGAGAGAATGCCAGTGAGGGTACAGAGGATGCCCAGGCCCTGGTTTAGAGATAGGGGGTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949660 lncRNA downstream 2224 5175237 ~ 5177003 (-) True G1703183
TU1949651 lncRNA downstream 50250 5128437 ~ 5128977 (-) True G1703174
TU1949648 lncRNA downstream 55617 5123059 ~ 5123610 (-) True G1703171
TU1949646 lncRNA downstream 58018 5120876 ~ 5121209 (-) True G1703169
TU1949644 lncRNA downstream 61033 5117751 ~ 5118194 (-) True G1703167
TU1949662 lncRNA upstream 762 5180674 ~ 5181073 (-) True G1703185
TU1949683 lncRNA upstream 20475 5200387 ~ 5202057 (-) False G1703190
TU1949684 lncRNA upstream 20475 5200387 ~ 5202057 (-) False G1703190
TU1949685 lncRNA upstream 20475 5200387 ~ 5202057 (-) False G1703190
TU1949686 lncRNA upstream 20475 5200387 ~ 5202057 (-) False G1703190
XM_036958452.1 mRNA downstream 118909 5052618 ~ 5060318 (-) True LOC118942989
XM_036956647.1 mRNA downstream 208836 4932216 ~ 4970391 (-) False LOC118936570
XR_005038465.1 mRNA downstream 208838 4932216 ~ 4970389 (-) False LOC118936570
XM_036956662.1 mRNA upstream 22902 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 22902 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 22902 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 22902 5202814 ~ 5223353 (-) False LOC110518655
XM_036956665.1 mRNA upstream 22902 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 208872 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 213208 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 231816 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 245238 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 20915 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 52723 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 57496 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 240424 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 249556 5429468 ~ 5430172 (-) True G1703323

Expression Profile