RNA id: TU1949662


Basic Information

Item Value
RNA id TU1949662
length 400
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1703185
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5180674 ~ 5181073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagggaactGCCTGTACCTTGTAGCACAGTACCCCACCTAGATCCGTCTCGTTCCCACACCAACTCCCATCGCAGGTTCGTAATTCACTAGACGCCAAACataagaaaacagactgaaacagggaaggaatAACTGAACTTGTCCAGTAAGAAACGCTTAGTTTTGGATtatctgttgcaaaacgttttgctacagtgtgcactaatgaataacGACCCAACTCTTATTCAAGCCCTGTATGATATCATGTTGACTAACTTGTAAAGGGCAagcctatgtgtaactctgttgttgttgtattgggtcgaattgctatgcttgatcttggccaggtcgcagttgtaaatgagaccttgttctcaactagcctacctggttaaataatggtgaaataaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949661 lncRNA downstream 762 5179227 ~ 5179912 (-) True G1703184
TU1949660 lncRNA downstream 3671 5175237 ~ 5177003 (-) True G1703183
TU1949651 lncRNA downstream 51697 5128437 ~ 5128977 (-) True G1703174
TU1949648 lncRNA downstream 57064 5123059 ~ 5123610 (-) True G1703171
TU1949646 lncRNA downstream 59465 5120876 ~ 5121209 (-) True G1703169
TU1949683 lncRNA upstream 19314 5200387 ~ 5202057 (-) False G1703190
TU1949684 lncRNA upstream 19314 5200387 ~ 5202057 (-) False G1703190
TU1949685 lncRNA upstream 19314 5200387 ~ 5202057 (-) False G1703190
TU1949686 lncRNA upstream 19314 5200387 ~ 5202057 (-) False G1703190
TU1949688 lncRNA upstream 19314 5200387 ~ 5200758 (-) False G1703190
XM_036958452.1 mRNA downstream 120356 5052618 ~ 5060318 (-) True LOC118942989
XM_036956647.1 mRNA downstream 210283 4932216 ~ 4970391 (-) False LOC118936570
XR_005038465.1 mRNA downstream 210285 4932216 ~ 4970389 (-) False LOC118936570
XM_036956662.1 mRNA upstream 21741 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 21741 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 21741 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 21741 5202814 ~ 5223353 (-) False LOC110518655
XM_036956665.1 mRNA upstream 21741 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 210319 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 214655 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 233263 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 246685 4932214 ~ 4933989 (-) False LOC118936570
TU1949687 other upstream 19754 5200827 ~ 5202057 (-) True G1703190
TU1949706 other upstream 51562 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 56335 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 239263 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 248395 5429468 ~ 5430172 (-) True G1703323

Expression Profile