RNA id: TU1949684


Basic Information

Item Value
RNA id TU1949684
length 876
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G1703190
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5200387 ~ 5202057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCACAGCCAACACAAAGATCACTGTGAAGGGGAAAGCCATGACAACCCAGACTAAGATCACTGTGAAGGGGAAAGCCATGACAACCCAGACTAAGATCACTGTGAAGGGGAAAGCCATGACAACCCAGACTAAGATCACTGGAGGGGAAAGCCATGACAACCAACACTAAGATCACTGTGGAGGGGAATGCCATGACAACCCAGACTAAGATCACTGTGAAGGGGAAAGCCATGACAACCCAGACTAAGATCACTGTGAAGGGGAAAGCCATGACAACCCAGACTAAGATCACTGTGGAGGGGAAAGCCATGACAACCCAGACTAAGATCACTGTGGAGGGGAAAGCCATTATAGCTAGAAGTACTAGATTGGAGGCTTGTCAGGTGGGGGAAGGTTTAGTACTAGATTGGAGGCTTGTCAGGTAGGGGAAGGTTTAGTACTAGATTGGAGGCTTGTCAGGTAGGGGAAGGTTTAGTACTAGATTGGAGGCTTGTCAGGTGGAGGAAGGTTTAGTACTAGATTGGAGGCTTGTCAGGTAGGGGAAGGTTTAGTACTAGATTGGAGGCTTGTCAGGTAGGGGAAGGTTTAGTACTAGATTGGAGGCTTGTCAGGTAGGGGAAGGTTTAACTACCAAAACAGGGTTAAAAGAACTAGAATCACAGCAAACCAAAATACATGTTAGCCCATATAAATCAAAACCTGGGTTTAATATCATTAAAAAATGTCTCTTCAGCACTCCAATGGAATAACAGCCTTAAATGTTACAAACTTCAGTTAGTCGTCTTGCCTGGGTTGAGACTTGAGAAAGGAGCAGTGTTTTAATGTCATCTTGTGACCCAAATGgctccccatgggccctggtttaTAGTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949662 lncRNA downstream 19314 5180674 ~ 5181073 (-) True G1703185
TU1949661 lncRNA downstream 20475 5179227 ~ 5179912 (-) True G1703184
TU1949660 lncRNA downstream 23384 5175237 ~ 5177003 (-) True G1703183
TU1949651 lncRNA downstream 71410 5128437 ~ 5128977 (-) True G1703174
TU1949648 lncRNA downstream 76777 5123059 ~ 5123610 (-) True G1703171
TU1949664 lncRNA upstream 802 5202859 ~ 5213131 (-) False LOC110518655
TU1949666 lncRNA upstream 802 5202859 ~ 5213131 (-) False LOC110518655
TU1949671 lncRNA upstream 952 5203009 ~ 5213131 (-) False LOC110518655
TU1949675 lncRNA upstream 952 5203009 ~ 5213131 (-) True LOC110518655
TU1949691 lncRNA upstream 3961 5206018 ~ 5206870 (-) True G1703191
XM_036958452.1 mRNA downstream 140069 5052618 ~ 5060318 (-) True LOC118942989
XM_036956647.1 mRNA downstream 229996 4932216 ~ 4970391 (-) False LOC118936570
XR_005038465.1 mRNA downstream 229998 4932216 ~ 4970389 (-) False LOC118936570
XM_036956662.1 mRNA upstream 757 5202814 ~ 5223352 (-) False LOC110518655
XM_036956655.1 mRNA upstream 757 5202814 ~ 5223353 (-) False LOC110518655
XM_036956658.1 mRNA upstream 757 5202814 ~ 5223353 (-) False LOC110518655
XM_036956661.1 mRNA upstream 757 5202814 ~ 5223353 (-) False LOC110518655
XM_036956665.1 mRNA upstream 757 5202814 ~ 5223353 (-) False LOC110518655
TU1949491 other downstream 230032 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 234368 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 252976 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 266398 4932214 ~ 4933989 (-) False LOC118936570
TU1949706 other upstream 30578 5232635 ~ 5235225 (-) True G1703200
TU1949704 other upstream 35351 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 218279 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 227411 5429468 ~ 5430172 (-) True G1703323
TU1949828 other upstream 250891 5452948 ~ 5456111 (-) True LOC110491889

Expression Profile