RNA id: TU1949095


Basic Information

Item Value
RNA id TU1949095
length 206
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1702825
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5202073 ~ 5202278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACTAGTGCTGAGGAATCCCAGGATTTGTTATCTCAGATTAAAGACATGTATATATGGCAACGTCCTCAATTCTTAAATCATTGCAGAATCAGTAACTGTCTAGTTCTCCCTGAAGAAAGTGTCTCCTCTACTCCAATAGGCGCTGATGTTTTCTGCCTCCCCCTGCTGGTAGAAAGGTGCAATTACATTGTTCAGAATCATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949091 lncRNA upstream 29956 5171514 ~ 5172117 (+) True G1702821
TU1949090 lncRNA upstream 30254 5171514 ~ 5171819 (+) False G1702821
TU1948986 lncRNA upstream 31903 5155866 ~ 5170170 (+) True G1702740
TU1948981 lncRNA upstream 34253 5143644 ~ 5167820 (+) True G1702735
TU1949080 lncRNA upstream 82216 5119644 ~ 5119857 (+) True G1702813
TU1949107 lncRNA downstream 15563 5217841 ~ 5218298 (+) True G1702833
TU1949122 lncRNA downstream 38717 5240995 ~ 5241664 (+) True G1702847
TU1949142 lncRNA downstream 56955 5259233 ~ 5259935 (+) True G1702859
TU1949144 lncRNA downstream 65566 5267844 ~ 5268219 (+) True G1702860
TU1949146 lncRNA downstream 67923 5270201 ~ 5270802 (+) True G1702862
XM_036956653.1 mRNA upstream 1880 5182911 ~ 5200193 (+) False LOC110516940
XM_036956654.1 mRNA upstream 1880 5183258 ~ 5200193 (+) False LOC110516940
XM_036956652.1 mRNA upstream 1880 5184403 ~ 5200193 (+) False LOC110516940
XM_036956651.1 mRNA upstream 22134 5173660 ~ 5179939 (+) False LOC118942832
XR_005038468.1 mRNA upstream 22134 5173660 ~ 5179939 (+) False LOC118942832
XM_036956670.1 mRNA downstream 138256 5340534 ~ 5350434 (+) False LOC118942835
XM_036956669.1 mRNA downstream 138257 5340535 ~ 5350434 (+) True LOC118942835
XM_036956671.1 mRNA downstream 199930 5402208 ~ 5416558 (+) True LOC118942836
XM_036956674.1 mRNA downstream 255261 5457539 ~ 5472994 (+) True LOC110491886
XM_036956679.1 mRNA downstream 360944 5563222 ~ 5598052 (+) False LOC110511233
TU1948974 other upstream 13226 5184474 ~ 5188847 (+) True LOC110516940
TU1949056 other upstream 147609 5052447 ~ 5054464 (+) True G1702793
TU1948666 other upstream 801092 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 806558 4394993 ~ 4395515 (+) True G1702554
TU1947491 other upstream 1266036 3932787 ~ 3936037 (+) False G1701654
TU1949137 other downstream 51887 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 51887 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 383253 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 514921 5717199 ~ 5717701 (+) True G1703391
TU1950048 other downstream 781067 5983345 ~ 5994810 (+) True G1703427

Expression Profile