RNA id: TU1949107


Basic Information

Item Value
RNA id TU1949107
length 380
lncRNA type intronic
GC content 0.47
exon number 3
gene id G1702833
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5217841 ~ 5218298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaagaacacctgctctttccatgacatagactgaccaggtgaatccatgacacagactgaccaggtgaatccatgacacagactgaccaggtgaatccatgacatagactgaccaggtgaatccatgacgtagactgaccaggtgaatccatgacatagactgaccaggtgaatgcatgacatagactgaccaggtgaatgcatgacatagactgaccaggtgaatccatgacatagactgaccaggtgaatccatgacatagactgaccaggtgaatccatgacatagactgaccaggtgaatccatgacatagactgaccaggtgaatccatgacacagactgaccaggtgaatccatgacacagactgaccaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949095 lncRNA upstream 15563 5202073 ~ 5202278 (+) True G1702825
TU1949091 lncRNA upstream 45724 5171514 ~ 5172117 (+) True G1702821
TU1949090 lncRNA upstream 46022 5171514 ~ 5171819 (+) False G1702821
TU1948986 lncRNA upstream 47671 5155866 ~ 5170170 (+) True G1702740
TU1948981 lncRNA upstream 50021 5143644 ~ 5167820 (+) True G1702735
TU1949122 lncRNA downstream 22697 5240995 ~ 5241664 (+) True G1702847
TU1949142 lncRNA downstream 40935 5259233 ~ 5259935 (+) True G1702859
TU1949144 lncRNA downstream 49546 5267844 ~ 5268219 (+) True G1702860
TU1949146 lncRNA downstream 51903 5270201 ~ 5270802 (+) True G1702862
TU1949766 lncRNA downstream 106291 5324589 ~ 5324800 (+) True G1703242
XM_036956653.1 mRNA upstream 17648 5182911 ~ 5200193 (+) False LOC110516940
XM_036956654.1 mRNA upstream 17648 5183258 ~ 5200193 (+) False LOC110516940
XM_036956652.1 mRNA upstream 17648 5184403 ~ 5200193 (+) False LOC110516940
XR_005038469.1 mRNA upstream 37902 5173660 ~ 5179939 (+) True LOC118942832
XM_036956670.1 mRNA downstream 122236 5340534 ~ 5350434 (+) False LOC118942835
XM_036956669.1 mRNA downstream 122237 5340535 ~ 5350434 (+) True LOC118942835
XM_036956671.1 mRNA downstream 183910 5402208 ~ 5416558 (+) True LOC118942836
XM_036956674.1 mRNA downstream 239241 5457539 ~ 5472994 (+) True LOC110491886
XM_036956679.1 mRNA downstream 344924 5563222 ~ 5598052 (+) False LOC110511233
TU1948974 other upstream 28994 5184474 ~ 5188847 (+) True LOC110516940
TU1949056 other upstream 163377 5052447 ~ 5054464 (+) True G1702793
TU1948666 other upstream 816860 4384056 ~ 4400981 (+) True LOC110516816
TU1948694 other upstream 822326 4394993 ~ 4395515 (+) True G1702554
TU1947496 other upstream 1281804 3933930 ~ 3936037 (+) False G1701654
TU1949137 other downstream 35867 5254165 ~ 5254885 (+) False G1702856
TU1949138 other downstream 35867 5254165 ~ 5254885 (+) True G1702856
TU1949920 other downstream 367233 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 498901 5717199 ~ 5717701 (+) True G1703391
TU1950048 other downstream 765047 5983345 ~ 5994810 (+) True G1703427

Expression Profile