RNA id: TU1949706


Basic Information

Item Value
RNA id TU1949706
length 1136
RNA type TUCP
GC content 0.55
exon number 7
gene id G1703200
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5232635 ~ 5235225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggacagggggtaagggagggaggggtgttgaggacagggggtaagggagggaggggtgttgaggacagggggtaagggagggagaggtgTTGAGAAGGTCTAGAAGTGCCTCTAAGATCCTACCAGCCCACCTACAAACACCTGGAATCACACCTCTACCTGCAAACACCTGGAATCACACCTCTACCTGCAAACACCTGGAATCACACCTCTACCTGCAAACACCTGGAATCACACCTCTACCTGCAAACATGACAAGACTTTTAGACAGAGACGACCTGCCTGagctcactgcacagcacagagacaacctgcctgagctcactgcacagcacagagaCGACCTGCCTGAGCTCACTCCACAGCACAGAGACGACCTGCCTGagctcactgcacagcacagagaCGACCTGCCTGagctcactgcacagcacagagaCGACCTGCCTGagctcactgcacagcacagggacgACCTGCCTGAGCTCACtgcacagacagcagagaacacactgcacagacagcagagaacaccgcggagacagcagagaacacagcacagacagcagagaacacagcacagacagcagagaacacagcacagacagcagagaacacactgcacagcacagacagcagagaacacagcacatacagcagagaacacagcacagacagcagagaacacactgcacagcacagacagcagagaacacactgcacagcacagacagcagagaacacactgcacagcacagacagcagagaacacactgcacagcacagacagcagagaacacactgcacagcacagacagcagagaacacactgcacagcacagacagcagagaacacagcacagacagcagagaacacactgcacagcacagacagcagagaacacagcacagacagcagagaacacagcacagacagcagagaacacactgcacagcacagacagcagagaacacagcacagacagcagagaacacagcacagacagcagagaacacagcacagacagcagagaacacactgcacagcacagacagcagagaacacagcacagacagcagagaacacagcacagacagcagagaacacagcacagacagcagagaacacagcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949664 lncRNA downstream 19504 5202859 ~ 5213131 (-) False LOC110518655
TU1949666 lncRNA downstream 19504 5202859 ~ 5213131 (-) False LOC110518655
TU1949671 lncRNA downstream 19504 5203009 ~ 5213131 (-) False LOC110518655
TU1949675 lncRNA downstream 19504 5203009 ~ 5213131 (-) True LOC110518655
TU1949691 lncRNA downstream 25765 5206018 ~ 5206870 (-) True G1703191
TU1949726 lncRNA upstream 35120 5270345 ~ 5271041 (-) True G1703215
TU1949730 lncRNA upstream 43803 5279028 ~ 5279429 (-) True G1703219
TU1949733 lncRNA upstream 62103 5297328 ~ 5298348 (-) True G1703222
TU1949736 lncRNA upstream 65380 5300605 ~ 5301853 (-) True G1703225
TU1949824 lncRNA upstream 79239 5314464 ~ 5314770 (-) True G1703292
XM_036958453.1 mRNA downstream 4548 5226069 ~ 5228087 (-) True LOC118942990
XM_036956657.1 mRNA downstream 8299 5202814 ~ 5224336 (-) False LOC110518655
XM_036956663.1 mRNA downstream 8299 5202814 ~ 5224336 (-) False LOC110518655
XM_036956656.1 mRNA downstream 8319 5202814 ~ 5224316 (-) False LOC110518655
XM_036956659.1 mRNA downstream 8852 5202814 ~ 5223783 (-) False LOC110518655
XM_036956667.1 mRNA upstream 1015 5236240 ~ 5313028 (-) False LOC118942834
XM_036956668.1 mRNA upstream 1015 5236240 ~ 5313033 (-) False LOC118942834
XM_036956672.1 mRNA upstream 185649 5420874 ~ 5426626 (-) False LOC118942837
XM_036956675.1 mRNA upstream 200051 5435276 ~ 5452253 (-) True LOC110491894
XR_005038473.1 mRNA upstream 208734 5443959 ~ 5449709 (-) False LOC118942838
TU1949687 other downstream 30578 5200827 ~ 5202057 (-) True G1703190
TU1949491 other downstream 262280 4967580 ~ 4970355 (-) True LOC118936570
TU1949495 other downstream 266616 4961982 ~ 4966019 (-) False LOC118936570
TU1949528 other downstream 285224 4946598 ~ 4947411 (-) True G1703085
TU1949477 other downstream 298646 4932214 ~ 4933989 (-) False LOC118936570
TU1949704 other upstream 2183 5237408 ~ 5312973 (-) True LOC118942834
TU1949830 other upstream 185111 5420336 ~ 5426592 (-) True LOC118942837
TU1949859 other upstream 194243 5429468 ~ 5430172 (-) True G1703323
TU1949828 other upstream 217723 5452948 ~ 5456111 (-) True LOC110491889
TU1950407 other upstream 664117 5899342 ~ 5899781 (-) True G1703658

Expression Profile