RNA id: TU1949142


Basic Information

Item Value
RNA id TU1949142
length 312
lncRNA type intronic
GC content 0.40
exon number 4
gene id G1702859
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5259233 ~ 5259935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagtgccaggtatacgtaatgatgagtgccaggtgtgaatcatGATGATCTACAGGTGTGAATCATGATGATCTACAGGTGTGAATCATGATGATCTACAGGTGTGAATCATGATGATCTACAGGTGTGAATCTTGATGAtctacaggtgtgcgtaatgatgatctacaggtgtgcgtaatgatgatctacaggtgtgcgtaatgatgatctACAGGTGTGAATCATGATGATCTACAGGTGTGAATCATGATGATCTACAGGTGTGATTAATAATGATCTACAGGTGTGAATCATGATGATCTACAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949122 lncRNA upstream 17569 5240995 ~ 5241664 (+) True G1702847
TU1949107 lncRNA upstream 40935 5217841 ~ 5218298 (+) True G1702833
TU1949095 lncRNA upstream 56955 5202073 ~ 5202278 (+) True G1702825
TU1949091 lncRNA upstream 87116 5171514 ~ 5172117 (+) True G1702821
TU1949090 lncRNA upstream 87414 5171514 ~ 5171819 (+) False G1702821
TU1949144 lncRNA downstream 7909 5267844 ~ 5268219 (+) True G1702860
TU1949146 lncRNA downstream 10266 5270201 ~ 5270802 (+) True G1702862
TU1949766 lncRNA downstream 64654 5324589 ~ 5324800 (+) True G1703242
TU1949770 lncRNA downstream 69279 5329214 ~ 5329581 (+) True G1703246
TU1949771 lncRNA downstream 70348 5330283 ~ 5330499 (+) True G1703247
XM_036956653.1 mRNA upstream 59040 5182911 ~ 5200193 (+) False LOC110516940
XM_036956654.1 mRNA upstream 59040 5183258 ~ 5200193 (+) False LOC110516940
XM_036956652.1 mRNA upstream 59040 5184403 ~ 5200193 (+) False LOC110516940
XR_005038469.1 mRNA upstream 79294 5173660 ~ 5179939 (+) True LOC118942832
XM_036956670.1 mRNA downstream 80599 5340534 ~ 5350434 (+) False LOC118942835
XM_036956669.1 mRNA downstream 80600 5340535 ~ 5350434 (+) True LOC118942835
XM_036956671.1 mRNA downstream 142273 5402208 ~ 5416558 (+) True LOC118942836
XM_036956674.1 mRNA downstream 197604 5457539 ~ 5472994 (+) True LOC110491886
XM_036956679.1 mRNA downstream 303287 5563222 ~ 5598052 (+) False LOC110511233
TU1949137 other upstream 4348 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 4348 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 70386 5184474 ~ 5188847 (+) True LOC110516940
TU1949056 other upstream 204769 5052447 ~ 5054464 (+) True G1702793
TU1948666 other upstream 858252 4384056 ~ 4400981 (+) True LOC110516816
TU1949920 other downstream 325596 5585531 ~ 5596428 (+) True LOC110511233
TU1949988 other downstream 457264 5717199 ~ 5717701 (+) True G1703391
TU1950048 other downstream 723410 5983345 ~ 5994810 (+) True G1703427
TU1950617 other downstream 968179 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 968179 6228114 ~ 6252320 (+) False mrps33

Expression Profile