RNA id: TU1949859


Basic Information

Item Value
RNA id TU1949859
length 483
RNA type TUCP
GC content 0.52
exon number 3
gene id G1703323
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5429468 ~ 5430889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcctgcctaatgagaggccctggtctcacctcatcctgcctaatgagaggtTctgggtctcacctcatcctgcctaatgagaggacctggtctcacctcatcctgccCAATGAGAGGACTGGTTctgggtctcacctcatcctgcctaatgagaggaCCGGCCCTGGTCTCAActcatcctgcctaatgagaggaCCGGTCctgggtctcacctcatcctgcctaatgagaggaCCGGTCctgggtctcacctcatcctgcctaatgagaggaCCAGCCCCGGTCTCACCTCAACCCTCCTAATGAGAGGACCGTGCACAGAACACTGTTCTGTTGAGTTTTATAAAAAAACTACATTGTGACATTGTGAACAATTGACATTACTTACTTAGTCCTTTAGGTTCTTATGTGGAACATAGGGCTTCCAGGAGACAGAGCCACTGCTGCTCTTCCGCCTTTTGGGGAGGGGTTTTCATGACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1949851 lncRNA downstream 59924 5369094 ~ 5369544 (-) True G1703316
TU1949848 lncRNA downstream 68248 5360596 ~ 5361220 (-) True G1703313
TU1949847 lncRNA downstream 68950 5360296 ~ 5360518 (-) True G1703312
TU1949831 lncRNA downstream 70550 5351270 ~ 5358918 (-) True G1703298
TU1949842 lncRNA downstream 93188 5336006 ~ 5336280 (-) True G1703307
TU1949866 lncRNA upstream 36397 5466569 ~ 5467856 (-) True G1703330
TU1949871 lncRNA upstream 51689 5481861 ~ 5482386 (-) True G1703334
TU1950203 lncRNA upstream 69545 5499717 ~ 5500536 (-) True G1703550
TU1950263 lncRNA upstream 152985 5583157 ~ 5585446 (-) True G1703573
TU1950267 lncRNA upstream 153439 5583611 ~ 5586059 (-) False G1703574
XM_036956672.1 mRNA downstream 2842 5420874 ~ 5426626 (-) False LOC118942837
XM_036956668.1 mRNA downstream 116435 5236240 ~ 5313033 (-) False LOC118942834
XM_036956667.1 mRNA downstream 116440 5236240 ~ 5313028 (-) False LOC118942834
XM_036958453.1 mRNA downstream 201381 5226069 ~ 5228087 (-) True LOC118942990
XM_036956663.1 mRNA downstream 205132 5202814 ~ 5224336 (-) False LOC110518655
XM_036956675.1 mRNA upstream 5104 5435276 ~ 5452253 (-) True LOC110491894
XR_005038473.1 mRNA upstream 13787 5443959 ~ 5449709 (-) False LOC118942838
XR_005038471.1 mRNA upstream 18765 5448937 ~ 5449709 (-) False LOC118942838
XR_005038474.1 mRNA upstream 18765 5448937 ~ 5449928 (-) False LOC118942838
XR_005038472.1 mRNA upstream 18779 5448951 ~ 5449709 (-) True LOC118942838
TU1949830 other downstream 2876 5420336 ~ 5426592 (-) True LOC118942837
TU1949704 other downstream 116495 5237408 ~ 5312973 (-) True LOC118942834
TU1949706 other downstream 194243 5232635 ~ 5235225 (-) True G1703200
TU1949687 other downstream 227411 5200827 ~ 5202057 (-) True G1703190
TU1949491 other downstream 459113 4967580 ~ 4970355 (-) True LOC118936570
TU1949828 other upstream 22776 5452948 ~ 5456111 (-) True LOC110491889
TU1950407 other upstream 469170 5899342 ~ 5899781 (-) True G1703658
TU1950464 other upstream 519862 5950034 ~ 5963423 (-) False LOC118942843
TU1950429 other upstream 561526 5991698 ~ 5996426 (-) True G1703669
TU1950752 other upstream 875381 6305553 ~ 6308220 (-) False G1703878

Expression Profile