RNA id: TU1950296


Basic Information

Item Value
RNA id TU1950296
length 1318
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G1703588
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5655963 ~ 5714860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTGTCAAGGTTTATTTTAATATAACTTTCTGTCAATACAAGTCTGGGATTCAAAAACGCAAGGAAAAACAAACATATTCAACTGGAGACGAGAATAGAAGGACCAACAGCAGGGAGTGGAAGGACAGCAGGAGGAGAAACATTTAGAAAGACAGGCTAGTGTTGTATTCACACTGAACACAATCTGGTCTGtcttattggtgtgtgtgtgtgtgtgtgtctgtcttattgtggtgtgtgtgtgtgtgtgtgtagtgtgtgtgtctgtcttattggtgtgtggtgtgtgtgtgtgtagtgtgtgtgtgtgtctttcttattggtgtgtatgtgtagtgtgtgtgtgttgtgtagtgtgtgtgtgtgtgtggtgtggtgtgtagtgtgtgtggtgtggtgtggtgtgtggtgtgtagtgtgtgtggtgtgtagtgtgtgtggtgtgtagtgtgtgtagtgtgtgtatgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtctctccatatTGGACAGAATGCTTATTTATCCTCTTAGTGTTTATTTTACAGCTCATAGGAGCGTCGTCCTTAAACTATCAACCCCTCTGTATCAAATatcactttttatttatttattaaacaaCACACATTGTTCTTCAAAGTCAAGTCCACACAATcataataatatataattcattcactttttccccccaaaaaaatcataAAGTTTTAAATATactagaaataaaaatatataacagTTGATATATATACTTTAAAATATAATCTAAACTTGTAAACGGTATGAAAGCAATGATAGCAACGTGAAACTGCATCCAATATGTGCCTCCTCAGACAGTTGAATAGTACAGTAGAGACCTGGGACTTTATTAAGGCTGGTAGCCAGAGGTGGGCCAGCTTGGTACATGGCCACTGGGGTCATTTGACGGACTGTGTTTGACCGactgtgtttgggtgtgtgtaaCCTACATGAGCACAGAAGAGGCATCATGTTCCACATGTTTTCTAAGGGGTGACGATGGCCCCTTATTGAGCTGACTGTAGTTGTCTGACTGTTTTCGGGTTCTGTGTAACCTAGTTGTCTGACCGTTTTCGGATCTGTGTAACCTAGTTGGCTGAATGTTTCCGGGTTCTGTGTAACCTATATTCTCCagctgttctctgttctgttcgtAACATTTCGACCAGGACCTAGGCCACCAGTTTGGATAAGGAGTGAGTGACCGTGCCTGTACTTCCTGTATTCCTGAAATCTGTCCAAGACCAAGGAGACCTTTTACTCAGAGCTCAGTCTTGCCCCCAACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950312 lncRNA downstream 9372 5646277 ~ 5646814 (-) True G1703592
TU1950242 lncRNA downstream 20225 5600482 ~ 5635961 (-) True G1703559
TU1950310 lncRNA downstream 23058 5630823 ~ 5633128 (-) True G1703590
TU1950241 lncRNA downstream 54347 5600482 ~ 5601839 (-) False G1703559
TU1950249 lncRNA downstream 56961 5598537 ~ 5599225 (-) True G1703560
TU1950331 lncRNA upstream 16829 5674649 ~ 5675362 (-) True G1703600
TU1950323 lncRNA upstream 22420 5680240 ~ 5686229 (-) False LOC118942840
TU1950324 lncRNA upstream 22420 5680240 ~ 5683814 (-) True LOC118942840
TU1950342 lncRNA upstream 35181 5693001 ~ 5710044 (-) False G1703605
TU1950344 lncRNA upstream 39312 5697132 ~ 5710044 (-) False G1703605
XM_036956678.1 mRNA downstream 94763 5496219 ~ 5561423 (-) True LOC110511232
XM_036956677.1 mRNA downstream 175287 5478445 ~ 5480899 (-) True vhll
XM_036956676.1 mRNA downstream 175292 5478445 ~ 5480894 (-) False vhll
XM_021565712.2 mRNA downstream 199831 5452970 ~ 5456355 (-) False LOC110491889
XR_005038472.1 mRNA downstream 206477 5448951 ~ 5449709 (-) True LOC118942838
XR_005038479.1 mRNA upstream 26642 5684462 ~ 5686216 (-) False LOC118942840
XM_036956686.1 mRNA upstream 30125 5687945 ~ 5822290 (-) True LOC118942841
XR_005038480.1 mRNA upstream 293050 5950870 ~ 5951611 (-) False LOC118942843
XR_005038481.1 mRNA upstream 293050 5950870 ~ 5951611 (-) False LOC118942843
XR_005038482.1 mRNA upstream 293050 5950870 ~ 5951611 (-) False LOC118942843
TU1949828 other downstream 200075 5452948 ~ 5456111 (-) True LOC110491889
TU1949859 other downstream 226014 5429468 ~ 5430172 (-) True G1703323
TU1949830 other downstream 229594 5420336 ~ 5426592 (-) True LOC118942837
TU1949704 other downstream 343213 5237408 ~ 5312973 (-) True LOC118942834
TU1949706 other downstream 420961 5232635 ~ 5235225 (-) True G1703200
TU1950407 other upstream 241522 5899342 ~ 5899781 (-) True G1703658
TU1950464 other upstream 292214 5950034 ~ 5963423 (-) False LOC118942843
TU1950429 other upstream 333878 5991698 ~ 5996426 (-) True G1703669
TU1950752 other upstream 647733 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 647733 6305553 ~ 6308220 (-) False G1703878

Expression Profile