RNA id: TU1949988


Basic Information

Item Value
RNA id TU1949988
length 396
RNA type TUCP
GC content 0.39
exon number 2
gene id G1703391
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5717199 ~ 5717701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgtgatgtcattatggggcattgtgatatcattatggggtattgtgatatcattatggggcattgtgatatcattatagggcattgtgatgtcattatggggcattgtgatatcattatggggcattgtgatgtcattatggggaattgtgatatcattatggggcattgtgatgtcattatggggcattgtgatatcattatggggcattgtgatgtcattatggggcattgtgatgtcattatggggcattgtgatatcattatggggcattgtgatgtcattatggggtattgtgatatcattatggggtattgtgatgtcagtatggggtattgtgatgtcagtatggggtattgtgatatcattatggggtattgtgatgtcattatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950000 lncRNA upstream 3134 5712633 ~ 5714065 (+) True G1703401
TU1949977 lncRNA upstream 39052 5675743 ~ 5678147 (+) True G1703388
TU1949910 lncRNA upstream 60020 5656187 ~ 5657179 (+) False LOC110519381
TU1949911 lncRNA upstream 60020 5656187 ~ 5657179 (+) True LOC110519381
TU1949957 lncRNA upstream 73078 5642997 ~ 5644121 (+) True G1703381
TU1949962 lncRNA downstream 18123 5735824 ~ 5740334 (+) False G1703386
TU1949971 lncRNA downstream 21340 5739041 ~ 5740334 (+) True G1703386
TU1950019 lncRNA downstream 87485 5805186 ~ 5805425 (+) True G1703420
TU1950063 lncRNA downstream 124565 5842266 ~ 5842914 (+) True G1703437
TU1950064 lncRNA downstream 127072 5844773 ~ 5845046 (+) True G1703438
XM_036956681.1 mRNA upstream 60612 5611886 ~ 5656587 (+) False LOC110519381
XM_036956682.1 mRNA upstream 60612 5611887 ~ 5656587 (+) False LOC110519381
XM_036956680.1 mRNA upstream 60612 5612122 ~ 5656587 (+) False LOC110519381
XR_005038478.1 mRNA upstream 60612 5612122 ~ 5656587 (+) False LOC110519381
XM_036956683.1 mRNA upstream 60612 5627769 ~ 5656587 (+) False LOC110519381
XM_036956685.1 mRNA downstream 147589 5865290 ~ 5877708 (+) False LOC118936346
XM_036956684.1 mRNA downstream 147589 5865290 ~ 5879291 (+) False LOC118936346
XM_036956690.1 mRNA downstream 261650 5979351 ~ 5986641 (+) False LOC118942842
XM_036956691.1 mRNA downstream 261698 5979399 ~ 5986641 (+) False LOC118942842
XM_036956689.1 mRNA downstream 261706 5979407 ~ 5986641 (+) False LOC118942842
TU1949920 other upstream 120771 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 462314 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 462314 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 528352 5184474 ~ 5188847 (+) True LOC110516940
TU1949056 other upstream 662735 5052447 ~ 5054464 (+) True G1702793
TU1950048 other downstream 265644 5983345 ~ 5994810 (+) True G1703427
TU1950617 other downstream 510413 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 510413 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 510413 6228114 ~ 6252320 (+) False mrps33
TU1950620 other downstream 510413 6228114 ~ 6252320 (+) False mrps33

Expression Profile