RNA id: TU1950063


Basic Information

Item Value
RNA id TU1950063
length 649
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1703437
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5842266 ~ 5842914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactaacagtttacagacggtagacaattaaggtcacagttatgaaaacttaggacactaaagaggcctttctactgactctgaaaaacaccaaaagaaagatgcccagggtccctgctcacgTGCCTTAggcgtgccttaggcatgcagcaaggaggcatgaggactgcagatgtggccagggtcaataaattgcaatgtccgtactgtgagatgcctaagacagcgctacaaggagacaggacagacggctgatcgtccttgcagtggcagaccacttgtaacaacacctgcacaggatgacacctgcgggacaggtacaggatggaaacaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgctcagactgtccgcataGACTGAGacaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaccagacatcaccggcaacaacatcgcctatgggcacaaacccaccgtcgctggaccagacaggactggcaaaaagtgctcttcactgacgagttgcggttttgtctcaccaggggtgatggtcggattcgcgtttatcgttgaaggaatgagcgttacaccgaggcctgtactctggagcgggatcgatttggaggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950019 lncRNA upstream 36841 5805186 ~ 5805425 (+) True G1703420
TU1949962 lncRNA upstream 101932 5735824 ~ 5740334 (+) False G1703386
TU1949971 lncRNA upstream 101932 5739041 ~ 5740334 (+) True G1703386
TU1949985 lncRNA upstream 122313 5680066 ~ 5719953 (+) True G1703389
TU1950000 lncRNA upstream 128201 5712633 ~ 5714065 (+) True G1703401
TU1950064 lncRNA downstream 1859 5844773 ~ 5845046 (+) True G1703438
TU1950067 lncRNA downstream 9269 5852183 ~ 5852416 (+) True G1703441
TU1950069 lncRNA downstream 14244 5857158 ~ 5857485 (+) True G1703443
TU1950070 lncRNA downstream 18239 5861153 ~ 5861369 (+) True G1703444
TU1950071 lncRNA downstream 19670 5862584 ~ 5862837 (+) True G1703445
XM_036956681.1 mRNA upstream 185679 5611886 ~ 5656587 (+) False LOC110519381
XM_036956685.1 mRNA downstream 22376 5865290 ~ 5877708 (+) False LOC118936346
XM_036956684.1 mRNA downstream 22376 5865290 ~ 5879291 (+) False LOC118936346
XM_036956690.1 mRNA downstream 136437 5979351 ~ 5986641 (+) False LOC118942842
XM_036956691.1 mRNA downstream 136485 5979399 ~ 5986641 (+) False LOC118942842
XM_036956689.1 mRNA downstream 136493 5979407 ~ 5986641 (+) False LOC118942842
TU1949988 other upstream 124565 5717199 ~ 5717701 (+) True G1703391
TU1949920 other upstream 245838 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 587381 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 587381 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 653419 5184474 ~ 5188847 (+) True LOC110516940
TU1950048 other downstream 140431 5983345 ~ 5994810 (+) True G1703427
TU1950617 other downstream 385200 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 385200 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 385200 6228114 ~ 6252320 (+) False mrps33
TU1950620 other downstream 385200 6228114 ~ 6252320 (+) False mrps33

Expression Profile