RNA id: TU1950082


Basic Information

Item Value
RNA id TU1950082
length 302
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1703456
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5909955 ~ 5910256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCCTCACTAGTTCTATAGATGAGATATTTAGTATCCTCACAAGACCTTCTGTGACATTCatgttaaccttttactgcagtgggctaaatcagggtcacacagagtgattatTGGTAgacttaaacaaatctactttgaaactaaAGTATActccctcacacacatggttatgggctaatgaaaaaagaagacacctgtaccatgtcagatacagAGTTGACATGTATtgcattttgagtttgcatcccgaTATCACACtttatatactgtacctgtcaaaagtttggacacacctactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950077 lncRNA upstream 12426 5897213 ~ 5897529 (+) True G1703451
TU1950075 lncRNA upstream 21149 5888544 ~ 5888806 (+) True G1703449
TU1950055 lncRNA upstream 28423 5880871 ~ 5881532 (+) True G1703429
TU1950027 lncRNA upstream 30658 5877549 ~ 5879297 (+) False LOC118936346
TU1950083 lncRNA downstream 2962 5913218 ~ 5913629 (+) True G1703457
TU1950092 lncRNA downstream 31153 5941409 ~ 5944149 (+) True G1703466
TU1950061 lncRNA downstream 40260 5950516 ~ 5951083 (+) True G1703435
TU1950107 lncRNA downstream 88376 5998632 ~ 5999038 (+) True G1703478
TU1950115 lncRNA downstream 101110 6011366 ~ 6013717 (+) True G1703483
XM_036956684.1 mRNA upstream 30664 5865290 ~ 5879291 (+) False LOC118936346
XM_036956685.1 mRNA upstream 32247 5865290 ~ 5877708 (+) False LOC118936346
XM_036956680.1 mRNA upstream 253368 5612122 ~ 5656587 (+) False LOC110519381
XM_036956690.1 mRNA downstream 69095 5979351 ~ 5986641 (+) False LOC118942842
XM_036956691.1 mRNA downstream 69143 5979399 ~ 5986641 (+) False LOC118942842
XM_036956689.1 mRNA downstream 69151 5979407 ~ 5986641 (+) False LOC118942842
XM_036956692.1 mRNA downstream 69155 5979411 ~ 5986641 (+) False LOC118942842
XM_036956693.1 mRNA downstream 69181 5979437 ~ 5986641 (+) True LOC118942842
TU1949988 other upstream 192254 5717199 ~ 5717701 (+) True G1703391
TU1949920 other upstream 313527 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 655070 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 655070 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 721108 5184474 ~ 5188847 (+) True LOC110516940
TU1950048 other downstream 73089 5983345 ~ 5994810 (+) True G1703427
TU1950617 other downstream 317858 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 317858 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 317858 6228114 ~ 6252320 (+) False mrps33
TU1950620 other downstream 317858 6228114 ~ 6252320 (+) False mrps33

Expression Profile