RNA id: TU1950416


Basic Information

Item Value
RNA id TU1950416
length 228
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1703667
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5912485 ~ 5912712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgccttgaattctaaataactcactgacagtgtcaccggcaaagcacccccacaccatcacacctcctcccccatgcttcacggtggaaaccacacgtGCAGAGATCCTCCGtccatctactctgcgtctcacaaagagacacagtggttggaaacaaaaatctcacatttggactcattagacaaAGGAGAGATTTCCAACGGTCTGATTGGCTCGTGATTGCCCCG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950415 lncRNA downstream 1122 5910985 ~ 5911363 (-) True G1703666
TU1950413 lncRNA downstream 4120 5907890 ~ 5908365 (-) True G1703664
TU1950411 lncRNA downstream 5560 5906617 ~ 5906925 (-) True G1703662
TU1950410 lncRNA downstream 6099 5906133 ~ 5906386 (-) True G1703661
TU1950406 lncRNA downstream 13149 5898875 ~ 5899336 (-) True G1703657
TU1950463 lncRNA upstream 37322 5950034 ~ 5951656 (-) False LOC118942843
TU1950465 lncRNA upstream 37322 5950034 ~ 5951656 (-) True LOC118942843
TU1950473 lncRNA upstream 60654 5973366 ~ 5974885 (-) True G1703703
TU1950431 lncRNA upstream 66743 5979455 ~ 5983770 (-) False G1703670
TU1950474 lncRNA upstream 68163 5980875 ~ 5983010 (-) True G1703704
XM_036956686.1 mRNA downstream 90195 5687945 ~ 5822290 (-) True LOC118942841
XR_005038479.1 mRNA downstream 226269 5684462 ~ 5686216 (-) False LOC118942840
XM_036956678.1 mRNA downstream 351062 5496219 ~ 5561423 (-) True LOC110511232
XM_036956677.1 mRNA downstream 431586 5478445 ~ 5480899 (-) True vhll
XM_036956676.1 mRNA downstream 431591 5478445 ~ 5480894 (-) False vhll
XR_005038480.1 mRNA upstream 38158 5950870 ~ 5951611 (-) False LOC118942843
XR_005038481.1 mRNA upstream 38158 5950870 ~ 5951611 (-) False LOC118942843
XR_005038482.1 mRNA upstream 38158 5950870 ~ 5951611 (-) False LOC118942843
XR_005038483.1 mRNA upstream 38158 5950870 ~ 5951611 (-) False LOC118942843
XR_005038484.1 mRNA upstream 38158 5950870 ~ 5951611 (-) False LOC118942843
TU1950407 other downstream 12704 5899342 ~ 5899781 (-) True G1703658
TU1949828 other downstream 456374 5452948 ~ 5456111 (-) True LOC110491889
TU1949859 other downstream 482313 5429468 ~ 5430172 (-) True G1703323
TU1949830 other downstream 485893 5420336 ~ 5426592 (-) True LOC118942837
TU1949704 other downstream 599512 5237408 ~ 5312973 (-) True LOC118942834
TU1950464 other upstream 37322 5950034 ~ 5963423 (-) False LOC118942843
TU1950429 other upstream 78986 5991698 ~ 5996426 (-) True G1703669
TU1950752 other upstream 392841 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 392841 6305553 ~ 6308220 (-) False G1703878
TU1950755 other upstream 392841 6305553 ~ 6308220 (-) False G1703878

Expression Profile